Zinc in PDB 6xty: Cryoem Structure of Human Cmg Bound to and-1 (Cmga)
Enzymatic activity of Cryoem Structure of Human Cmg Bound to and-1 (Cmga)
All present enzymatic activity of Cryoem Structure of Human Cmg Bound to and-1 (Cmga):
3.6.4.12;
Zinc Binding Sites:
The binding sites of Zinc atom in the Cryoem Structure of Human Cmg Bound to and-1 (Cmga)
(pdb code 6xty). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the
Cryoem Structure of Human Cmg Bound to and-1 (Cmga), PDB code: 6xty:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
Zinc binding site 1 out
of 5 in 6xty
Go back to
Zinc Binding Sites List in 6xty
Zinc binding site 1 out
of 5 in the Cryoem Structure of Human Cmg Bound to and-1 (Cmga)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Cryoem Structure of Human Cmg Bound to and-1 (Cmga) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:Zn1000
b:0.9
occ:1.00
|
SG
|
2:CYS332
|
2.2
|
0.9
|
1.0
|
SG
|
2:CYS352
|
2.2
|
0.3
|
1.0
|
SG
|
2:CYS355
|
2.2
|
0.8
|
1.0
|
SG
|
2:CYS329
|
2.3
|
0.4
|
1.0
|
CB
|
2:CYS329
|
2.8
|
0.4
|
1.0
|
CB
|
2:CYS352
|
3.1
|
0.3
|
1.0
|
CB
|
2:CYS332
|
3.1
|
0.9
|
1.0
|
CB
|
2:CYS355
|
3.9
|
0.8
|
1.0
|
N
|
2:CYS332
|
4.0
|
0.9
|
1.0
|
OG
|
2:SER357
|
4.1
|
0.0
|
1.0
|
N
|
2:CYS355
|
4.1
|
0.8
|
1.0
|
CA
|
2:CYS332
|
4.2
|
0.9
|
1.0
|
CA
|
2:CYS329
|
4.3
|
0.4
|
1.0
|
CB
|
2:SER357
|
4.3
|
0.0
|
1.0
|
CA
|
2:CYS355
|
4.5
|
0.8
|
1.0
|
CA
|
2:CYS352
|
4.6
|
0.3
|
1.0
|
C
|
2:LYS331
|
4.7
|
0.3
|
1.0
|
CB
|
2:GLU354
|
4.8
|
0.4
|
1.0
|
N
|
2:LYS331
|
4.8
|
0.3
|
1.0
|
C
|
2:CYS329
|
4.8
|
0.4
|
1.0
|
C
|
2:GLU354
|
4.9
|
0.4
|
1.0
|
C
|
2:CYS355
|
5.0
|
0.8
|
1.0
|
N
|
2:SER357
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 5 in 6xty
Go back to
Zinc Binding Sites List in 6xty
Zinc binding site 2 out
of 5 in the Cryoem Structure of Human Cmg Bound to and-1 (Cmga)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Cryoem Structure of Human Cmg Bound to and-1 (Cmga) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
4:Zn1000
b:0.7
occ:1.00
|
SG
|
4:CYS306
|
2.1
|
0.3
|
1.0
|
SG
|
4:CYS328
|
2.1
|
0.8
|
1.0
|
SG
|
4:CYS309
|
2.2
|
0.7
|
1.0
|
SG
|
4:CYS331
|
2.3
|
0.3
|
1.0
|
CB
|
4:CYS328
|
2.5
|
0.8
|
1.0
|
CB
|
4:CYS306
|
2.8
|
0.3
|
1.0
|
CB
|
4:CYS309
|
3.1
|
0.7
|
1.0
|
N
|
4:CYS309
|
3.2
|
0.7
|
1.0
|
OG
|
4:SER336
|
3.4
|
0.6
|
1.0
|
CA
|
4:CYS309
|
3.7
|
0.7
|
1.0
|
CB
|
4:CYS331
|
3.8
|
0.3
|
1.0
|
CA
|
4:CYS328
|
3.9
|
0.8
|
1.0
|
CB
|
4:VAL308
|
4.2
|
0.4
|
1.0
|
CA
|
4:CYS306
|
4.2
|
0.3
|
1.0
|
C
|
4:VAL308
|
4.3
|
0.4
|
1.0
|
N
|
4:VAL308
|
4.4
|
0.4
|
1.0
|
N
|
4:CYS331
|
4.5
|
0.3
|
1.0
|
CA
|
4:VAL308
|
4.5
|
0.4
|
1.0
|
SD
|
4:MET337
|
4.6
|
0.7
|
1.0
|
C
|
4:CYS309
|
4.6
|
0.7
|
1.0
|
CB
|
4:SER336
|
4.6
|
0.6
|
1.0
|
CA
|
4:CYS331
|
4.7
|
0.3
|
1.0
|
N
|
4:ALA310
|
4.7
|
0.8
|
1.0
|
N
|
4:CYS328
|
4.7
|
0.8
|
1.0
|
N
|
4:HIS332
|
4.8
|
0.8
|
1.0
|
C
|
4:CYS306
|
4.8
|
0.3
|
1.0
|
C
|
4:CYS328
|
4.8
|
0.8
|
1.0
|
CG1
|
4:VAL308
|
4.9
|
0.4
|
1.0
|
N
|
4:GLN307
|
5.0
|
0.6
|
1.0
|
|
Zinc binding site 3 out
of 5 in 6xty
Go back to
Zinc Binding Sites List in 6xty
Zinc binding site 3 out
of 5 in the Cryoem Structure of Human Cmg Bound to and-1 (Cmga)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Cryoem Structure of Human Cmg Bound to and-1 (Cmga) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
5:Zn1000
b:0.1
occ:1.00
|
SG
|
5:CYS175
|
2.1
|
0.7
|
1.0
|
SG
|
5:CYS197
|
2.2
|
0.7
|
1.0
|
SG
|
5:CYS207
|
2.3
|
0.3
|
1.0
|
SG
|
5:CYS172
|
2.3
|
0.1
|
1.0
|
CB
|
5:CYS175
|
3.1
|
0.7
|
1.0
|
CB
|
5:CYS172
|
3.4
|
0.1
|
1.0
|
CB
|
5:CYS207
|
3.4
|
0.3
|
1.0
|
CB
|
5:CYS197
|
3.5
|
0.7
|
1.0
|
N
|
5:CYS175
|
3.6
|
0.7
|
1.0
|
OG
|
5:SER174
|
3.8
|
0.2
|
1.0
|
CA
|
5:CYS175
|
3.9
|
0.7
|
1.0
|
C
|
5:CYS175
|
4.4
|
0.7
|
1.0
|
N
|
5:ARG176
|
4.5
|
0.3
|
1.0
|
CB
|
5:ASN177
|
4.7
|
0.8
|
1.0
|
N
|
5:ASN177
|
4.7
|
0.8
|
1.0
|
C
|
5:SER174
|
4.7
|
0.2
|
1.0
|
CA
|
5:CYS172
|
4.8
|
0.1
|
1.0
|
CA
|
5:CYS207
|
4.8
|
0.3
|
1.0
|
CA
|
5:CYS197
|
4.8
|
0.7
|
1.0
|
N
|
5:SER174
|
4.8
|
0.2
|
1.0
|
CG
|
5:PRO211
|
4.9
|
0.8
|
1.0
|
CB
|
5:PRO211
|
4.9
|
0.8
|
1.0
|
CB
|
5:SER174
|
5.0
|
0.2
|
1.0
|
|
Zinc binding site 4 out
of 5 in 6xty
Go back to
Zinc Binding Sites List in 6xty
Zinc binding site 4 out
of 5 in the Cryoem Structure of Human Cmg Bound to and-1 (Cmga)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Cryoem Structure of Human Cmg Bound to and-1 (Cmga) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
6:Zn1000
b:0.5
occ:1.00
|
SG
|
6:CYS185
|
2.3
|
0.1
|
1.0
|
SG
|
6:CYS158
|
2.3
|
0.3
|
1.0
|
SG
|
6:CYS161
|
2.4
|
0.2
|
1.0
|
SG
|
6:CYS180
|
2.4
|
0.2
|
1.0
|
CB
|
6:CYS185
|
3.0
|
0.1
|
1.0
|
CB
|
6:CYS180
|
3.2
|
0.2
|
1.0
|
OD1
|
6:ASP160
|
3.3
|
0.1
|
1.0
|
CB
|
6:CYS161
|
3.4
|
0.2
|
1.0
|
CA
|
6:CYS185
|
3.8
|
0.1
|
1.0
|
CB
|
6:CYS158
|
3.8
|
0.3
|
1.0
|
OG1
|
6:THR163
|
4.0
|
0.2
|
1.0
|
CE1
|
6:PHE191
|
4.2
|
0.1
|
1.0
|
N
|
6:CYS161
|
4.3
|
0.2
|
1.0
|
CB
|
6:ASN182
|
4.3
|
0.1
|
1.0
|
CA
|
6:CYS161
|
4.5
|
0.2
|
1.0
|
CG
|
6:ASP160
|
4.5
|
0.1
|
1.0
|
CA
|
6:CYS180
|
4.7
|
0.2
|
1.0
|
O
|
6:VAL184
|
4.7
|
0.6
|
1.0
|
N
|
6:CYS185
|
4.8
|
0.1
|
1.0
|
ND2
|
6:ASN182
|
4.8
|
0.1
|
1.0
|
C
|
6:CYS185
|
4.8
|
0.1
|
1.0
|
CZ
|
6:PHE191
|
4.8
|
0.1
|
1.0
|
OD2
|
6:ASP160
|
4.9
|
0.1
|
1.0
|
OD1
|
6:ASN187
|
5.0
|
0.5
|
1.0
|
|
Zinc binding site 5 out
of 5 in 6xty
Go back to
Zinc Binding Sites List in 6xty
Zinc binding site 5 out
of 5 in the Cryoem Structure of Human Cmg Bound to and-1 (Cmga)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Cryoem Structure of Human Cmg Bound to and-1 (Cmga) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
7:Zn1000
b:0.9
occ:1.00
|
SG
|
7:CYS184
|
2.2
|
0.8
|
1.0
|
SG
|
7:CYS206
|
2.3
|
0.2
|
1.0
|
SG
|
7:CYS187
|
2.3
|
0.0
|
1.0
|
SG
|
7:CYS211
|
2.4
|
0.5
|
1.0
|
CB
|
7:CYS184
|
2.9
|
0.8
|
1.0
|
CB
|
7:CYS211
|
3.0
|
0.5
|
1.0
|
CB
|
7:CYS187
|
3.0
|
0.0
|
1.0
|
CB
|
7:CYS206
|
3.6
|
0.2
|
1.0
|
N
|
7:CYS187
|
4.0
|
0.0
|
1.0
|
CA
|
7:CYS187
|
4.1
|
0.0
|
1.0
|
OG
|
7:SER208
|
4.1
|
0.4
|
1.0
|
CA
|
7:CYS184
|
4.4
|
0.8
|
1.0
|
CA
|
7:CYS211
|
4.5
|
0.5
|
1.0
|
O
|
7:CYS184
|
4.8
|
0.8
|
1.0
|
C
|
7:CYS184
|
4.9
|
0.8
|
1.0
|
C
|
7:CYS187
|
4.9
|
0.0
|
1.0
|
CA
|
7:CYS206
|
5.0
|
0.2
|
1.0
|
|
Reference:
N.J.Rzechorzek,
S.W.Hardwick,
V.A.Jatikusumo,
D.Y.Chirgadze,
L.Pellegrini.
Cryoem Structures of Human Cmg - Atpgammas - Dna and Cmg - and-1 Complexes Nucleic Acids Res. 2020.
ISSN: ESSN 1362-4962
DOI: 10.1093/NAR/GKAA429
Page generated: Tue Oct 29 11:13:56 2024
|