Zinc in PDB 6x46: uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains)
Zinc Binding Sites:
The binding sites of Zinc atom in the uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains)
(pdb code 6x46). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains), PDB code: 6x46:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 6x46
Go back to
Zinc Binding Sites List in 6x46
Zinc binding site 1 out
of 2 in the uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:0.0
occ:1.00
|
NE2
|
A:HIS33
|
2.0
|
0.0
|
1.0
|
ND1
|
A:HIS23
|
2.0
|
0.0
|
1.0
|
SG
|
A:CYS37
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS17
|
2.3
|
0.0
|
1.0
|
CE1
|
A:HIS23
|
2.9
|
0.0
|
1.0
|
CE1
|
A:HIS33
|
2.9
|
0.0
|
1.0
|
CG
|
A:HIS23
|
3.0
|
0.0
|
1.0
|
CD2
|
A:HIS33
|
3.0
|
0.0
|
1.0
|
HB2
|
A:HIS23
|
3.1
|
0.0
|
1.0
|
HE1
|
A:HIS23
|
3.1
|
0.0
|
1.0
|
HE1
|
A:HIS33
|
3.2
|
0.0
|
1.0
|
HD1
|
A:TYR19
|
3.2
|
0.0
|
1.0
|
HD2
|
A:HIS33
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS37
|
3.3
|
0.0
|
1.0
|
HB2
|
A:TYR19
|
3.3
|
0.0
|
1.0
|
HB3
|
A:HIS23
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS17
|
3.3
|
0.0
|
1.0
|
CB
|
A:HIS23
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS37
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS17
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS17
|
3.6
|
0.0
|
1.0
|
HB3
|
A:CYS37
|
3.7
|
0.0
|
1.0
|
NE2
|
A:HIS23
|
3.9
|
0.0
|
1.0
|
HB3
|
A:ASP20
|
4.0
|
0.0
|
1.0
|
ND1
|
A:HIS33
|
4.0
|
0.0
|
1.0
|
CD2
|
A:HIS23
|
4.0
|
0.0
|
1.0
|
CG
|
A:HIS33
|
4.0
|
0.0
|
1.0
|
H
|
A:ASP20
|
4.1
|
0.0
|
1.0
|
CD1
|
A:TYR19
|
4.2
|
0.0
|
1.0
|
HD13
|
A:ILE25
|
4.3
|
0.0
|
1.0
|
CB
|
A:TYR19
|
4.3
|
0.0
|
1.0
|
H
|
A:TYR19
|
4.6
|
0.0
|
1.0
|
N
|
A:ASP20
|
4.6
|
0.0
|
1.0
|
O
|
A:ASP20
|
4.6
|
0.0
|
1.0
|
HD12
|
A:ILE25
|
4.7
|
0.0
|
1.0
|
HE1
|
A:HIS41
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS37
|
4.7
|
0.0
|
1.0
|
HB2
|
A:ASP20
|
4.8
|
0.0
|
1.0
|
CG
|
A:TYR19
|
4.8
|
0.0
|
1.0
|
CB
|
A:ASP20
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS17
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS37
|
4.8
|
0.0
|
1.0
|
HE2
|
A:HIS23
|
4.8
|
0.0
|
1.0
|
HD1
|
A:HIS33
|
4.9
|
0.0
|
1.0
|
CA
|
A:HIS23
|
4.9
|
0.0
|
1.0
|
HB3
|
A:TYR19
|
4.9
|
0.0
|
1.0
|
O
|
A:HIS33
|
5.0
|
0.0
|
1.0
|
HD2
|
A:HIS23
|
5.0
|
0.0
|
1.0
|
HA
|
A:CYS17
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 6x46
Go back to
Zinc Binding Sites List in 6x46
Zinc binding site 2 out
of 2 in the uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains)
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn202
b:0.0
occ:1.00
|
NE2
|
A:HIS67
|
2.0
|
0.0
|
1.0
|
ND1
|
A:HIS57
|
2.0
|
0.0
|
1.0
|
SG
|
A:CYS71
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS51
|
2.3
|
0.0
|
1.0
|
CE1
|
A:HIS57
|
2.9
|
0.0
|
1.0
|
CE1
|
A:HIS67
|
2.9
|
0.0
|
1.0
|
CG
|
A:HIS57
|
2.9
|
0.0
|
1.0
|
CD2
|
A:HIS67
|
3.0
|
0.0
|
1.0
|
HB2
|
A:HIS57
|
3.1
|
0.0
|
1.0
|
HB3
|
A:HIS57
|
3.2
|
0.0
|
1.0
|
HE1
|
A:HIS57
|
3.2
|
0.0
|
1.0
|
HE1
|
A:HIS67
|
3.2
|
0.0
|
1.0
|
HD2
|
A:HIS67
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS51
|
3.2
|
0.0
|
1.0
|
CB
|
A:HIS57
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS71
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS51
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS71
|
3.4
|
0.0
|
1.0
|
HB2
|
A:PHE53
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS71
|
3.5
|
0.0
|
1.0
|
OG
|
A:SER76
|
3.6
|
0.0
|
1.0
|
HB3
|
A:CYS51
|
3.6
|
0.0
|
1.0
|
HB3
|
A:ASN54
|
3.6
|
0.0
|
1.0
|
HD2
|
A:PHE53
|
3.7
|
0.0
|
1.0
|
NE2
|
A:HIS57
|
4.0
|
0.0
|
1.0
|
ND1
|
A:HIS67
|
4.0
|
0.0
|
1.0
|
CD2
|
A:HIS57
|
4.0
|
0.0
|
1.0
|
HG
|
A:SER76
|
4.0
|
0.0
|
1.0
|
CG
|
A:HIS67
|
4.0
|
0.0
|
1.0
|
CB
|
A:PHE53
|
4.4
|
0.0
|
1.0
|
H
|
A:PHE53
|
4.5
|
0.0
|
1.0
|
CD2
|
A:PHE53
|
4.6
|
0.0
|
1.0
|
HB3
|
A:SER76
|
4.6
|
0.0
|
1.0
|
CB
|
A:ASN54
|
4.7
|
0.0
|
1.0
|
H
|
A:ASN54
|
4.7
|
0.0
|
1.0
|
CB
|
A:SER76
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS51
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS71
|
4.8
|
0.0
|
1.0
|
CA
|
A:HIS57
|
4.8
|
0.0
|
1.0
|
N
|
A:ASN54
|
4.9
|
0.0
|
1.0
|
HD1
|
A:HIS67
|
4.9
|
0.0
|
1.0
|
HB2
|
A:ASN54
|
4.9
|
0.0
|
1.0
|
HE2
|
A:HIS57
|
4.9
|
0.0
|
1.0
|
HB3
|
A:PHE53
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS51
|
4.9
|
0.0
|
1.0
|
O
|
A:ASN54
|
4.9
|
0.0
|
1.0
|
H
|
A:SER76
|
4.9
|
0.0
|
1.0
|
HA
|
A:LYS74
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS71
|
5.0
|
0.0
|
1.0
|
CG
|
A:PHE53
|
5.0
|
0.0
|
1.0
|
O
|
A:HIS67
|
5.0
|
0.0
|
1.0
|
HD2
|
A:HIS57
|
5.0
|
0.0
|
1.0
|
|
Reference:
J.J.Ipsaro,
P.A.O'brien,
S.Bhattacharya,
A.G.Palmer Iii,
L.Joshua-Tor.
Asterix/GTSF1 Links Trnas and Pirna Silencing of Retrotransposons To Be Published.
Page generated: Tue Oct 29 10:37:06 2024
|