Zinc in PDB 6x46: uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains)

Zinc Binding Sites:

The binding sites of Zinc atom in the uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains) (pdb code 6x46). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains), PDB code: 6x46:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6x46

Go back to Zinc Binding Sites List in 6x46
Zinc binding site 1 out of 2 in the uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
NE2 A:HIS33 2.0 0.0 1.0
ND1 A:HIS23 2.0 0.0 1.0
SG A:CYS37 2.3 0.0 1.0
SG A:CYS17 2.3 0.0 1.0
CE1 A:HIS23 2.9 0.0 1.0
CE1 A:HIS33 2.9 0.0 1.0
CG A:HIS23 3.0 0.0 1.0
CD2 A:HIS33 3.0 0.0 1.0
HB2 A:HIS23 3.1 0.0 1.0
HE1 A:HIS23 3.1 0.0 1.0
HE1 A:HIS33 3.2 0.0 1.0
HD1 A:TYR19 3.2 0.0 1.0
HD2 A:HIS33 3.2 0.0 1.0
HB2 A:CYS37 3.3 0.0 1.0
HB2 A:TYR19 3.3 0.0 1.0
HB3 A:HIS23 3.3 0.0 1.0
HB2 A:CYS17 3.3 0.0 1.0
CB A:HIS23 3.3 0.0 1.0
CB A:CYS37 3.4 0.0 1.0
CB A:CYS17 3.4 0.0 1.0
HB3 A:CYS17 3.6 0.0 1.0
HB3 A:CYS37 3.7 0.0 1.0
NE2 A:HIS23 3.9 0.0 1.0
HB3 A:ASP20 4.0 0.0 1.0
ND1 A:HIS33 4.0 0.0 1.0
CD2 A:HIS23 4.0 0.0 1.0
CG A:HIS33 4.0 0.0 1.0
H A:ASP20 4.1 0.0 1.0
CD1 A:TYR19 4.2 0.0 1.0
HD13 A:ILE25 4.3 0.0 1.0
CB A:TYR19 4.3 0.0 1.0
H A:TYR19 4.6 0.0 1.0
N A:ASP20 4.6 0.0 1.0
O A:ASP20 4.6 0.0 1.0
HD12 A:ILE25 4.7 0.0 1.0
HE1 A:HIS41 4.7 0.0 1.0
CA A:CYS37 4.7 0.0 1.0
HB2 A:ASP20 4.8 0.0 1.0
CG A:TYR19 4.8 0.0 1.0
CB A:ASP20 4.8 0.0 1.0
CA A:CYS17 4.8 0.0 1.0
HA A:CYS37 4.8 0.0 1.0
HE2 A:HIS23 4.8 0.0 1.0
HD1 A:HIS33 4.9 0.0 1.0
CA A:HIS23 4.9 0.0 1.0
HB3 A:TYR19 4.9 0.0 1.0
O A:HIS33 5.0 0.0 1.0
HD2 A:HIS23 5.0 0.0 1.0
HA A:CYS17 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 6x46

Go back to Zinc Binding Sites List in 6x46
Zinc binding site 2 out of 2 in the uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Solution Structure of Asterix/GTSF1 From Mouse (Chhc Zinc Finger Domains) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:0.0
occ:1.00
NE2 A:HIS67 2.0 0.0 1.0
ND1 A:HIS57 2.0 0.0 1.0
SG A:CYS71 2.3 0.0 1.0
SG A:CYS51 2.3 0.0 1.0
CE1 A:HIS57 2.9 0.0 1.0
CE1 A:HIS67 2.9 0.0 1.0
CG A:HIS57 2.9 0.0 1.0
CD2 A:HIS67 3.0 0.0 1.0
HB2 A:HIS57 3.1 0.0 1.0
HB3 A:HIS57 3.2 0.0 1.0
HE1 A:HIS57 3.2 0.0 1.0
HE1 A:HIS67 3.2 0.0 1.0
HD2 A:HIS67 3.2 0.0 1.0
HB2 A:CYS51 3.2 0.0 1.0
CB A:HIS57 3.3 0.0 1.0
HB2 A:CYS71 3.3 0.0 1.0
CB A:CYS51 3.4 0.0 1.0
CB A:CYS71 3.4 0.0 1.0
HB2 A:PHE53 3.4 0.0 1.0
HB3 A:CYS71 3.5 0.0 1.0
OG A:SER76 3.6 0.0 1.0
HB3 A:CYS51 3.6 0.0 1.0
HB3 A:ASN54 3.6 0.0 1.0
HD2 A:PHE53 3.7 0.0 1.0
NE2 A:HIS57 4.0 0.0 1.0
ND1 A:HIS67 4.0 0.0 1.0
CD2 A:HIS57 4.0 0.0 1.0
HG A:SER76 4.0 0.0 1.0
CG A:HIS67 4.0 0.0 1.0
CB A:PHE53 4.4 0.0 1.0
H A:PHE53 4.5 0.0 1.0
CD2 A:PHE53 4.6 0.0 1.0
HB3 A:SER76 4.6 0.0 1.0
CB A:ASN54 4.7 0.0 1.0
H A:ASN54 4.7 0.0 1.0
CB A:SER76 4.7 0.0 1.0
CA A:CYS51 4.7 0.0 1.0
CA A:CYS71 4.8 0.0 1.0
CA A:HIS57 4.8 0.0 1.0
N A:ASN54 4.9 0.0 1.0
HD1 A:HIS67 4.9 0.0 1.0
HB2 A:ASN54 4.9 0.0 1.0
HE2 A:HIS57 4.9 0.0 1.0
HB3 A:PHE53 4.9 0.0 1.0
HA A:CYS51 4.9 0.0 1.0
O A:ASN54 4.9 0.0 1.0
H A:SER76 4.9 0.0 1.0
HA A:LYS74 4.9 0.0 1.0
HA A:CYS71 5.0 0.0 1.0
CG A:PHE53 5.0 0.0 1.0
O A:HIS67 5.0 0.0 1.0
HD2 A:HIS57 5.0 0.0 1.0

Reference:

J.J.Ipsaro, P.A.O'brien, S.Bhattacharya, A.G.Palmer Iii, L.Joshua-Tor. Asterix/GTSF1 Links Trnas and Pirna Silencing of Retrotransposons To Be Published.
Page generated: Sat Apr 3 18:27:50 2021

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