Zinc in PDB 6wq1: Eukaryotic LANCL2 Protein

The structure of Eukaryotic LANCL2 Protein, PDB code: 6wq1 was solved by S.K.Nair, N.Garg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.61 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	52.415, 108.012, 152.013, 90, 91.26, 90
R / Rfree (%)	18.4 / 24.5

The binding sites of Zinc atom in the Eukaryotic LANCL2 Protein (pdb code 6wq1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Eukaryotic LANCL2 Protein, PDB code: 6wq1:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Eukaryotic LANCL2 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Eukaryotic LANCL2 Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:20.8 occ:1.00 ND1 A:HIS368 2.1 20.2 1.0 SG A:CYS367 2.3 15.1 1.0 SG A:CYS321 2.4 15.3 1.0 O A:HOH788 2.6 13.6 1.0 CE1 A:HIS368 3.0 16.7 1.0 CB A:CYS321 3.1 16.0 1.0 CG A:HIS368 3.2 15.4 1.0 CB A:CYS367 3.4 17.1 1.0 CB A:HIS368 3.6 17.3 1.0 C A:CYS367 3.7 14.9 1.0 O A:CYS367 3.7 14.5 1.0 N A:HIS368 4.0 14.1 1.0 OH A:TYR103 4.0 16.6 1.0 CA A:CYS367 4.1 14.8 1.0 NE2 A:HIS368 4.1 16.0 1.0 CD2 A:HIS368 4.3 14.8 1.0 CA A:HIS368 4.4 16.6 1.0 CA A:CYS321 4.5 14.0 1.0 N A:CYS321 4.7 13.6 1.0

Zinc binding site 2 out of 4 in the Eukaryotic LANCL2 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Eukaryotic LANCL2 Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn501 b:18.8 occ:1.00 ND1 B:HIS368 2.1 12.8 1.0 O B:HOH784 2.3 6.1 1.0 SG B:CYS367 2.3 11.6 1.0 SG B:CYS321 2.4 11.7 1.0 CE1 B:HIS368 3.0 15.3 1.0 CB B:CYS321 3.1 9.9 1.0 CG B:HIS368 3.2 13.3 1.0 CB B:CYS367 3.3 10.9 1.0 C B:CYS367 3.6 11.9 1.0 O B:CYS367 3.6 10.8 1.0 CB B:HIS368 3.7 14.3 1.0 OH B:TYR103 4.0 12.8 1.0 N B:HIS368 4.0 11.8 1.0 CA B:CYS367 4.0 10.9 1.0 NE2 B:HIS368 4.2 11.0 1.0 CD2 B:HIS368 4.3 12.5 1.0 CA B:HIS368 4.4 12.1 1.0 CA B:CYS321 4.5 14.1 1.0 N B:CYS321 4.7 9.6 1.0 ND1 B:HIS319 4.8 10.9 1.0

Zinc binding site 3 out of 4 in the Eukaryotic LANCL2 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Eukaryotic LANCL2 Protein within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn501 b:18.8 occ:1.00 SG C:CYS321 2.2 12.9 1.0 ND1 C:HIS368 2.2 21.4 1.0 SG C:CYS367 2.3 14.6 1.0 O C:HOH750 2.3 13.6 1.0 CB C:CYS321 3.1 11.1 1.0 CG C:HIS368 3.2 17.4 1.0 CE1 C:HIS368 3.3 23.0 1.0 CB C:CYS367 3.4 17.0 1.0 CB C:HIS368 3.4 16.4 1.0 C C:CYS367 3.6 16.1 1.0 O C:CYS367 3.6 14.1 1.0 O C:HOH748 3.9 25.4 1.0 N C:HIS368 3.9 17.0 1.0 OH C:TYR103 4.0 18.2 1.0 CA C:CYS367 4.0 15.7 1.0 CA C:HIS368 4.2 17.4 1.0 CD2 C:HIS368 4.3 14.5 1.0 NE2 C:HIS368 4.4 19.8 1.0 CA C:CYS321 4.5 16.3 1.0 N C:CYS321 4.7 14.2 1.0 CD2 C:HIS319 5.0 13.9 1.0

Zinc binding site 4 out of 4 in the Eukaryotic LANCL2 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Eukaryotic LANCL2 Protein within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn501 b:22.5 occ:1.00 SG D:CYS321 2.3 18.1 1.0 ND1 D:HIS368 2.3 23.6 1.0 SG D:CYS367 2.4 16.0 1.0 O D:HOH725 2.4 13.9 1.0 CB D:CYS321 3.2 18.4 1.0 CE1 D:HIS368 3.2 18.2 1.0 CG D:HIS368 3.3 20.9 1.0 CB D:CYS367 3.4 19.5 1.0 CB D:HIS368 3.6 14.9 1.0 C D:CYS367 3.7 14.5 1.0 O D:CYS367 3.7 14.4 1.0 O D:HOH730 3.9 32.1 1.0 N D:HIS368 3.9 14.5 1.0 OH D:TYR103 4.1 22.4 1.0 CA D:CYS367 4.1 16.5 1.0 CA D:HIS368 4.3 16.2 1.0 NE2 D:HIS368 4.4 20.3 1.0 CD2 D:HIS368 4.4 17.8 1.0 CA D:CYS321 4.5 17.6 1.0 N D:CYS321 4.6 14.2 1.0

N.Garg, S.K.Nair. Structure of Eukaryotic LANCL2 To Be Published.