Zinc in PDB 6ty0: Nt Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1

The structure of Nt Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1, PDB code: 6ty0 was solved by F.Vignols, F.Hoh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	112.94 / 2.10
Space group	F 41 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	195.612, 195.612, 195.612, 90, 90, 90
R / Rfree (%)	18.4 / 21.4

The binding sites of Zinc atom in the Nt Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1 (pdb code 6ty0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Nt Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1, PDB code: 6ty0:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Nt Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Nt Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:36.9 occ:1.00 SG A:CYS64 2.3 35.2 1.0 SG A:CYS67 2.3 37.3 1.0 SG A:CYS95 2.4 41.8 1.0 SG A:CYS92 2.4 38.1 1.0 CB A:CYS64 3.1 37.0 1.0 CB A:CYS95 3.3 43.4 1.0 CB A:CYS67 3.4 40.1 1.0 CB A:CYS92 3.5 35.9 1.0 N A:CYS67 3.6 45.0 1.0 CA A:CYS67 4.0 40.3 1.0 N A:CYS92 4.1 33.7 1.0 N A:CYS95 4.3 44.3 1.0 CA A:CYS92 4.3 35.7 1.0 O A:HOH304 4.4 44.0 1.0 CA A:CYS95 4.4 43.8 1.0 CB A:GLN66 4.4 50.9 1.0 CB A:ALA69 4.5 30.4 1.0 C A:GLN66 4.6 49.8 1.0 CA A:CYS64 4.6 35.6 1.0 C A:CYS67 4.6 43.2 1.0 C A:CYS92 4.8 41.1 1.0 N A:GLN66 4.9 46.1 1.0 CA A:GLN66 4.9 49.3 1.0 O A:CYS92 4.9 36.0 1.0 O A:CYS67 5.0 50.0 1.0

Zinc binding site 2 out of 3 in the Nt Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Nt Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:56.6 occ:1.00 SG B:CYS67 2.1 55.9 1.0 SG B:CYS64 2.3 58.0 1.0 SG B:CYS92 2.3 50.2 1.0 SG B:CYS95 2.4 62.3 1.0 CB B:CYS64 3.1 52.4 1.0 CB B:CYS95 3.1 65.0 1.0 CB B:CYS67 3.3 55.3 1.0 CB B:CYS92 3.3 53.0 1.0 N B:CYS67 3.6 64.4 1.0 CA B:CYS67 4.0 56.6 1.0 N B:CYS92 4.0 46.7 1.0 N B:CYS95 4.1 69.8 1.0 CA B:CYS92 4.2 48.7 1.0 CA B:CYS95 4.2 63.3 1.0 CB B:GLN66 4.5 69.8 1.0 CA B:CYS64 4.5 51.9 1.0 C B:CYS67 4.6 59.0 1.0 CB B:ALA69 4.6 44.7 1.0 C B:GLN66 4.7 68.6 1.0 N B:GLN66 4.8 60.6 1.0 C B:CYS92 4.8 60.4 1.0 CA B:GLN66 4.9 68.2 1.0 O B:CYS92 4.9 56.8 1.0

Zinc binding site 3 out of 3 in the Nt Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Nt Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn202 b:66.9 occ:0.50 O A:HOH336 2.8 41.7 1.0 NE2 B:HIS70 3.7 39.0 1.0 NE2 A:HIS70 3.9 30.6 1.0 CD2 B:HIS70 4.1 38.8 1.0 CD2 A:HIS70 4.2 33.0 1.0 O A:HOH315 4.5 33.7 1.0 O A:HOH372 4.7 43.1 0.5 CB B:TYR72 4.7 36.8 1.0 CE1 B:HIS70 4.9 39.7 1.0

F.Vignols, F.Hoh. Nt Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1 To Be Published.