Zinc in PDB 6q3o: Protein-Aromatic Foldamer Complex Crystal Structure

All present enzymatic activity of Protein-Aromatic Foldamer Complex Crystal Structure:
4.2.1.1;

The structure of Protein-Aromatic Foldamer Complex Crystal Structure, PDB code: 6q3o was solved by C.Zeberko, B.Langlois D'estaintot, L.Fischer, T.Granier, B.Kauffmann, I.Huc, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.29 / 2.23
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	59.106, 76.478, 81.417, 66.10, 86.83, 73.60
R / Rfree (%)	21.2 / 25.3

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 29;

Binding sites:

The binding sites of Zinc atom in the Protein-Aromatic Foldamer Complex Crystal Structure (pdb code 6q3o). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 29 binding sites of Zinc where determined in the Protein-Aromatic Foldamer Complex Crystal Structure, PDB code: 6q3o:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 29 in the Protein-Aromatic Foldamer Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Protein-Aromatic Foldamer Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:23.9 occ:1.00 NE2 A:HIS94 2.0 26.2 1.0 N46 A:QZS303 2.0 16.9 1.0 NE2 A:HIS96 2.0 25.3 1.0 ND1 A:HIS119 2.1 22.4 1.0 CD2 A:HIS94 2.9 24.3 1.0 CE1 A:HIS119 3.0 22.2 1.0 CD2 A:HIS96 3.0 23.3 1.0 CE1 A:HIS96 3.0 24.1 1.0 CE1 A:HIS94 3.0 25.1 1.0 CG A:HIS119 3.1 23.2 1.0 S44 A:QZS303 3.1 17.6 1.0 O47 A:QZS303 3.2 15.8 1.0 CB A:HIS119 3.5 23.3 1.0 O A:HOH526 3.5 18.5 1.0 OG1 A:THR198 3.8 23.1 1.0 OE1 A:GLU106 3.9 24.5 1.0 CG A:HIS94 4.1 23.4 1.0 NE2 A:HIS119 4.1 23.4 1.0 ND1 A:HIS94 4.1 23.6 1.0 ND1 A:HIS96 4.1 24.6 1.0 CG A:HIS96 4.2 25.2 1.0 CD2 A:HIS119 4.2 23.2 1.0 O45 A:QZS303 4.2 17.0 1.0 C41 A:QZS303 4.2 17.4 1.0 O A:HOH591 4.8 19.4 1.0 CD A:GLU106 4.9 26.4 1.0 C42 A:QZS303 4.9 16.5 1.0 C40 A:QZS303 4.9 16.2 1.0 CA A:HIS119 4.9 23.8 1.0

Zinc binding site 2 out of 29 in the Protein-Aromatic Foldamer Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Protein-Aromatic Foldamer Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn306 b:34.9 occ:1.00 NE2 A:HIS4 2.2 33.8 1.0 NE2 A:HIS64 2.2 30.0 1.0 O A:HOH577 2.6 18.8 1.0 O A:HOH567 2.7 18.6 1.0 O A:HOH580 2.9 20.0 1.0 CD2 A:HIS64 3.1 29.8 1.0 CE1 A:HIS4 3.1 35.9 1.0 CD2 A:HIS4 3.2 36.3 1.0 CE1 A:HIS64 3.3 30.5 1.0 NE1 A:TRP5 4.0 29.6 1.0 O A:HOH575 4.2 19.1 1.0 ND1 A:HIS4 4.3 36.6 1.0 CG A:HIS64 4.3 29.0 1.0 CE2 A:TRP5 4.3 29.1 1.0 ND1 A:HIS64 4.3 28.8 1.0 O A:ASN62 4.4 26.0 1.0 CZ2 A:TRP5 4.4 27.8 1.0 CG A:HIS4 4.4 36.9 1.0 CD1 A:TRP5 4.8 30.5 1.0

Zinc binding site 3 out of 29 in the Protein-Aromatic Foldamer Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Protein-Aromatic Foldamer Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn307 b:35.8 occ:1.00 OD2 A:ASP189 2.1 35.0 1.0 O A:HOH546 2.2 18.7 1.0 OD1 A:ASP189 2.3 33.7 1.0 CG A:ASP189 2.5 33.5 1.0 O A:HOH574 2.6 18.3 1.0 CB A:ASP189 4.0 32.8 1.0 CB A:PHE259 4.4 33.7 1.0 NZ A:LYS212 4.4 37.4 1.0 OG A:SER187 4.5 31.2 1.0 O A:HOH512 4.8 20.2 1.0

Zinc binding site 4 out of 29 in the Protein-Aromatic Foldamer Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Protein-Aromatic Foldamer Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn308 b:53.1 occ:1.00 NE2 A:HIS17 2.1 46.2 1.0 O A:HOH555 2.4 21.7 1.0 O A:HOH569 2.4 19.9 1.0 O A:HOH572 2.6 20.2 1.0 CD2 A:HIS17 3.1 44.8 1.0 CE1 A:HIS17 3.1 44.5 1.0 ND1 A:HIS17 4.2 42.0 1.0 CG A:HIS17 4.2 42.6 1.0 NZ A:LYS24 4.8 50.4 1.0 CE A:LYS24 5.0 49.2 1.0

Zinc binding site 5 out of 29 in the Protein-Aromatic Foldamer Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Protein-Aromatic Foldamer Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn309 b:45.7 occ:1.00 OD2 A:ASP19 2.1 40.6 1.0 NE2 A:HIS15 2.3 44.7 1.0 O A:HOH566 2.5 18.9 1.0 CG A:ASP19 2.9 40.2 1.0 O A:HOH587 2.9 22.0 1.0 OD1 A:ASP19 3.0 39.6 1.0 CE1 A:HIS15 3.2 47.2 1.0 CD2 A:HIS15 3.3 42.8 1.0 CB A:ASP19 4.3 39.4 1.0 ND1 A:HIS15 4.4 44.1 1.0 CB A:LYS18 4.5 41.5 1.0 CG A:HIS15 4.5 42.5 1.0 N A:ASP19 5.0 38.7 1.0

Zinc binding site 6 out of 29 in the Protein-Aromatic Foldamer Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Protein-Aromatic Foldamer Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn310 b:18.4 occ:0.50 OD2 A:ASP129 2.0 42.3 1.0 OD1 C:ASP19 2.0 37.7 1.0 O A:HOH523 2.1 20.9 1.0 O C:HOH414 2.4 21.1 1.0 CG C:ASP19 3.0 37.8 1.0 ZN C:ZN310 3.1 21.4 0.5 CG A:ASP129 3.1 39.0 1.0 NZ A:LYS132 3.3 41.7 1.0 OD2 C:ASP19 3.3 37.5 1.0 OD1 A:ASP129 3.5 38.4 1.0 O A:HOH565 3.8 22.3 1.0 OE2 A:QVE305 4.2 20.5 1.0 CB C:ASP19 4.3 35.2 1.0 CB A:ASP129 4.4 35.5 1.0 CG A:LYS132 4.5 37.7 1.0 CE A:LYS132 4.6 41.1 1.0 CA C:ASP19 4.7 36.5 1.0 O C:LYS18 4.8 38.7 1.0

Zinc binding site 7 out of 29 in the Protein-Aromatic Foldamer Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Protein-Aromatic Foldamer Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn311 b:18.6 occ:1.00 OE1 A:GLU233 2.0 29.3 1.0 OE1 D:GLU233 2.0 30.9 1.0 OE2 B:GLU233 2.1 36.5 1.0 OE2 C:GLU233 2.1 30.2 1.0 CD A:GLU233 2.6 32.2 1.0 OE2 A:GLU233 2.7 33.3 1.0 CD D:GLU233 2.8 31.2 1.0 CD B:GLU233 2.8 33.8 1.0 CD C:GLU233 2.8 29.5 1.0 OE2 D:GLU233 2.9 32.3 1.0 OE1 B:GLU233 2.9 29.7 1.0 OE1 C:GLU233 3.0 25.8 1.0 CE A:LYS171 3.8 31.8 1.0 CE D:LYS171 3.8 31.4 1.0 NZ A:LYS171 3.9 32.8 1.0 NZ C:LYS171 4.0 30.2 1.0 NZ B:LYS171 4.0 34.3 1.0 CG A:GLU233 4.1 32.8 1.0 CG D:GLU233 4.2 31.9 1.0 NZ D:LYS171 4.2 32.9 1.0 CG C:GLU233 4.2 29.6 1.0 CG B:GLU233 4.3 34.3 1.0 CB A:GLU233 4.6 32.4 1.0 CB D:GLU233 4.7 30.9 1.0 O B:HOH502 4.9 18.4 1.0 O C:HOH490 4.9 17.6 1.0

Zinc binding site 8 out of 29 in the Protein-Aromatic Foldamer Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Protein-Aromatic Foldamer Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn312 b:42.9 occ:1.00 O A:HOH544 2.0 21.2 1.0 OD1 A:ASP34 2.1 41.6 1.0 OD2 A:ASP34 2.1 41.0 1.0 ND1 A:HIS36 2.1 44.9 1.0 O A:HOH462 2.3 21.0 1.0 CG A:ASP34 2.4 40.0 1.0 CE1 A:HIS36 3.1 47.1 1.0 CG A:HIS36 3.1 44.6 1.0 CB A:HIS36 3.4 43.0 1.0 CB A:ASP34 3.9 36.6 1.0 O A:HOH596 4.0 21.1 1.0 OD1 A:ASP110 4.2 35.2 1.0 NE2 A:HIS36 4.2 48.1 1.0 CD2 A:HIS36 4.2 47.4 1.0 N A:HIS36 4.3 38.8 1.0 O A:HOH602 4.4 21.4 1.0 CA A:HIS36 4.5 41.9 1.0 CA A:ASP34 4.6 36.5 1.0 O A:HOH581 4.9 20.9 1.0 C A:ASP34 4.9 37.2 1.0 N A:THR35 5.0 36.9 1.0

Zinc binding site 9 out of 29 in the Protein-Aromatic Foldamer Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Protein-Aromatic Foldamer Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn313 b:30.3 occ:1.00 OD1 A:ASP52 2.0 27.9 1.0 O A:HOH537 2.0 18.9 1.0 CG A:ASP52 2.9 30.5 1.0 OD2 A:ASP52 3.4 32.9 1.0 N A:ASP52 4.1 28.5 1.0 CB A:ASP52 4.2 31.9 1.0 N A:TYR51 4.2 29.9 1.0 O A:VAL49 4.3 29.8 1.0 NH1 A:ARG181 4.3 31.9 1.0 CD A:ARG181 4.4 31.0 1.0 CA A:ASP52 4.5 30.7 1.0 CA A:SER50 4.5 29.4 1.0 C A:SER50 4.8 28.0 1.0

Zinc binding site 10 out of 29 in the Protein-Aromatic Foldamer Complex Crystal Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Protein-Aromatic Foldamer Complex Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn314 b:37.7 occ:1.00 O A:HOH469 2.0 20.1 1.0 OD1 A:ASP72 2.1 31.7 1.0 O A:HOH553 2.2 19.2 1.0 O A:HOH593 2.8 19.7 1.0 CG A:ASP72 3.0 31.3 1.0 OD2 A:ASP72 3.2 31.3 1.0 O A:HOH559 3.7 21.2 1.0 O A:HOH582 3.8 20.9 1.0 O A:HOH599 4.3 20.0 1.0 CB A:ASP72 4.4 30.1 1.0 N A:ASP72 4.7 29.5 1.0 C A:ASP72 4.7 29.0 1.0 CA A:ASP72 4.8 30.4 1.0 O A:ASP72 4.9 28.4 1.0 N A:SER73 5.0 30.6 1.0

C.Zeberko, C.Zeberko, B.Langlois D'estaintot, L.Fischer, T.Granier, B.Kauffmann, I.Huc. N/A N/A.