Zinc in PDB 6jer: Apo Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii

All present enzymatic activity of Apo Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii:
3.5.1.88;

The structure of Apo Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jer was solved by T.H.Ho, I.H.Lee, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.17 / 2.40
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	39.425, 39.425, 187.888, 90.00, 90.00, 120.00
R / Rfree (%)	22.1 / 28.9

The binding sites of Zinc atom in the Apo Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii (pdb code 6jer). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Apo Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jer:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Apo Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Apo Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:43.4 occ:1.00 NE2 A:HIS138 2.0 37.0 1.0 NE2 A:HIS134 2.1 34.1 1.0 SG A:CYS92 2.3 44.2 1.0 CD2 A:HIS134 2.9 33.9 1.0 CE1 A:HIS138 2.9 35.7 1.0 CD2 A:HIS138 3.0 36.8 1.0 CE1 A:HIS134 3.2 37.7 1.0 CB A:CYS92 3.2 43.1 1.0 O A:HOH303 3.5 54.3 1.0 NE2 A:GLN51 3.5 29.7 1.0 OE1 A:GLN51 3.9 34.0 1.0 CA A:CYS92 3.9 42.5 1.0 CD A:GLN51 3.9 35.0 1.0 ND1 A:HIS138 4.0 34.1 1.0 CG A:HIS138 4.1 33.2 1.0 CG A:HIS134 4.1 42.0 1.0 ND1 A:HIS134 4.2 37.0 1.0 OE2 A:GLU135 4.3 41.3 1.0 OE1 A:GLU135 4.3 42.1 1.0 O A:GLY91 4.6 43.0 1.0 CD A:GLU135 4.6 34.5 1.0 C A:CYS92 4.8 41.8 1.0 N A:LEU93 4.8 38.8 1.0

Zinc binding site 2 out of 2 in the Apo Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Apo Crystal Structure of Class I Type A Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:42.3 occ:1.00 NE2 B:HIS138 2.0 34.0 1.0 NE2 B:HIS134 2.1 40.2 1.0 SG B:CYS92 2.2 43.9 1.0 CD2 B:HIS138 3.0 32.1 1.0 CD2 B:HIS134 3.0 41.1 1.0 CE1 B:HIS138 3.0 35.8 1.0 CE1 B:HIS134 3.1 44.6 1.0 CB B:CYS92 3.2 44.2 1.0 O B:HOH302 3.4 43.0 1.0 NE2 B:GLN51 3.7 26.2 1.0 CA B:CYS92 3.8 46.3 1.0 OE2 B:GLU135 4.0 53.5 1.0 OE1 B:GLN51 4.0 31.2 1.0 CD B:GLN51 4.0 31.9 1.0 ND1 B:HIS138 4.1 35.1 1.0 CG B:HIS138 4.1 32.2 1.0 CG B:HIS134 4.1 44.7 1.0 ND1 B:HIS134 4.2 43.7 1.0 OE1 B:GLU135 4.3 46.2 1.0 CD B:GLU135 4.5 42.5 1.0 O B:GLY91 4.6 46.5 1.0 C B:CYS92 4.7 44.1 1.0 N B:LEU93 4.8 41.2 1.0

L.W.Kang, T.H.Ho, I.H.Lee, L.W.Kang. N/A N/A.
ISSN: ISSN 2288-6982