Chemical elements
  Zinc
    Isotopes
    Energy
    Production
    Application
    Physical Properties
    Chemical Properties
    PDB 12ca-1ai0
    PDB 1aiy-1b6z
    PDB 1b71-1bs8
    PDB 1bsk-1cao
    PDB 1caq-1ctt
    PDB 1ctu-1de6
    PDB 1def-1dy0
    PDB 1dy1-1ed6
    PDB 1ed8-1exk
    PDB 1eyf-1fj9
    PDB 1fjg-1g0e
    PDB 1g0f-1gkq
    PDB 1gkr-1ha5
    PDB 1hbm-1hso
    PDB 1hsz-1i6v
    PDB 1i73-1im5
    PDB 1iml-1jcv
    PDB 1jcz-1jy8
    PDB 1jyb-1kh4
    PDB 1kh5-1kys
    PDB 1kzo-1llm
    PDB 1llu-1m7j
    PDB 1m9j-1mwo
    PDB 1mwq-1ndv
    PDB 1ndw-1nyq
    PDB 1nyr-1os4
    PDB 1os9-1p9w
    PDB 1paa-1pud
    PDB 1pv8-1q9l
    PDB 1q9m-1qv6
    PDB 1qv7-1r6o
    PDB 1r79-1ro9
    PDB 1ror-1sfo
    PDB 1sg0-1t3k
    PDB 1t4k-1tkh
    PDB 1tkj-1u0l
    PDB 1u10-1ums
    PDB 1umt-1v67
    PDB 1v6g-1vrq
    PDB 1vs0-1wew
    PDB 1wfe-1wwf
    PDB 1wwg-1xb1
    PDB 1xb8-1xpz
    PDB 1xq0-1y5w
    PDB 1y5x-1ylk
    PDB 1ylo-1z8r
    PDB 1z93-1zkx
    PDB 1zl6-258l
    PDB 2a03-2afo
    PDB 2afs-2atq
    PDB 2au3-2bfz
    PDB 2bg2-2c3a
    PDB 2c4r-2cij
    PDB 2cim-2czr
    PDB 2d0w-2djw
    PDB 2dkc-2e1b
    PDB 2e1s-2eer
    PDB 2eex-2em4
    PDB 2em5-2eoj
    PDB 2eok-2erq
    PDB 2esf-2fa7
    PDB 2fac-2fpx
    PDB 2fqp-2g84
    PDB 2g87-2gvf
    PDB 2gvi-2han
    PDB 2hap-2huc
    PDB 2hue-2imc
    PDB 2imr-2j65
    PDB 2j6a-2jq5
    PDB 2jr7-2kfn
    PDB 2kft-2l75
    PDB 2lgv-2nx9
    PDB 2nxa-2oc8
    PDB 2occ-2osm
    PDB 2oso-2p53
    PDB 2p57-2pow
    PDB 2ppb-2q8j
    PDB 2qa1-2qp6
    PDB 2qpj-2r71
    PDB 2r74-2sod
    PDB 2srt-2v86
    PDB 2v87-2vp7
    PDB 2vpb-2vyo
    PDB 2vz5-2wey
    PDB 2wfq-2wx0
    PDB 2wx1-2xam
    PDB 2xan-2xr9
    PDB 2xrg-2ytd
    PDB 2yte-2z30
    PDB 2z3g-2zet
    PDB 2zh0-3a32
    PDB 3a36-3aoi
    PDB 3at1-3bk1
    PDB 3bk2-3byr
    PDB 3byw-3cia
    PDB 3ciz-3d08
    PDB 3d09-3dbu
    PDB 3dc3-3dp6
    PDB 3dpe-3e1w
    PDB 3e1z-3ebh
    PDB 3ebi-3epk
    PDB 3epl-3f28
    PDB 3f2b-3fhe
    PDB 3fhp-3ful
    PDB 3fum-3g9y
    PDB 3ga3-3gpu
    PDB 3gpx-3h2w
    PDB 3h3e-3hfy
    PDB 3hgz-3hsn
    PDB 3hso-3i8v
    PDB 3i9b-3ij6
    PDB 3ijf-3ixe
    PDB 3iz0-3k34
    PDB 3k35-3kiy
    PDB 3kj1-3kvt
    PDB 3kwa-3lat
    PDB 3lcn-3lrr
    PDB 3ls1-3m1n
    PDB 3m1v-3mek
    PDB 3men-3mru
    PDB 3ms0-3n63
    PDB 3n64-3nin
    PDB 3nis-3ny2
    PDB 3ny3-3ohc
    PDB 3ohd-3oyl
    PDB 3oym-3pih
    PDB 3pki-3r0d
    PDB 3rj7-3t74
    PDB 3t87-3u9g
    PDB 3ua7-3v24
    PDB 3v25-4agl
    PDB 4agm-4dih
    PDB 4dii-4efs
      4dii
      4dlf
      4dlm
      4dnc
      4dnm
      4do0
      4do7
      4doz
      4dqy
      4dv8
      4dvi
      4dwc
      4dwv
      4dwx
      4dxb
      4dxc
      4dxh
      4dxu
      4dyg
      4dyk
      4dyo
      4dyu
      4dzh
      4e2f
      4e2i
      4e2w
      4e2x
      4e2y
      4e2z
      4e30
      4e31
      4e32
      4e33
      4e3d
      4e3f
      4e3g
      4e3h
      4e49
      4e4a
      4e5v
      4e6r
      4e7h
      4e7i
      4e7j
      4e7k
      4e7l
      4e7t
      4e7u
      4e7v
      4efs
    PDB 4eg2-4fc8
    PDB 4fgm-6tli
    PDB 6tmn-9nse

Zinc in PDB, part 133 (6601-6650), PDB files 4dii - 4efs






Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms.
PDB files 6601-6650 (4dii - 4efs):
  1. 4dii - X-Ray Structure Of The Complex Between Human Alpha Thrombin and Thrombin Binding Aptamer in the Presence of Potassium Ions
  2. 4dlf - Crystal Structure of An Amidohydrolase (COG3618) From Burkholderia Multivorans (Target Efi-500235) With Bound Zn, Space Group P3221
  3. 4dlm - Crystal Structure of An Amidohydrolase (COG3618) From Burkholderia Multivorans (Target Efi-500235) With Bound Zn, Space Group P212121
  4. 4dnc - Crystal Structure of Human Mof in Complex With MSL1
  5. 4dnm - Crystal Structure of An Amidohydrolase (COG3618) From Burkholderia Multivorans (Target Efi-500235) With Bound Hepes, Space Group P3221
  6. 4do0 - Crystal Structure of Human PHF8 in Complex With Daminozide
  7. 4do7 - Crystal Structure of An Amidohydrolase (COG3618) From Burkholderia Multivorans (Target Efi-500235) With Bound Zn, Space Group C2
  8. 4doz - Crystal Structure of Pyrococcus Furiosus CMR2 (CAS10)
  9. 4dqy - Structure of Human Parp-1 Bound to A Dna Double Strand Break
  10. 4dv8 - Anthrax Lethal Factor Metalloproteinase in Complex With the Hydroxamic Acid Based Small Molecule PT8421
  11. 4dvi - Crystal Structure of Tankyrase 1 With IWR2
  12. 4dwc - Crystal Structure of The Glycoprotein Erns From the Pestivirus Bvdv-1 in Complex With Zn Ions
  13. 4dwv - Horse Alcohol Dehydrogenase Complexed With Nad+ and 2,3,4,5,6- Pentafluorobenzyl Alcohol
  14. 4dwx - Crystal Structure of A Family Gh-19 Chitinase From Rye Seeds
  15. 4dxb - 2.29A Structure of the Engineered Mbp Tem-1 Fusion Protein RG13 in Complex With Zinc, P1 Space Group
  16. 4dxc - Crystal Structure of the Engineered Mbp Tem-1 Fusion Protein RG13, C2 Space Group
  17. 4dxh - Horse Liver Alcohol Dehydrogenase Complexed With Nad+ and 2,2,2- Trifluoroethanol
  18. 4dxu - Crystal Structure Of C-Lobe of Bovine Lactoferrin Complexed With Aminocaproic Acid At 1.46 A Resolution
  19. 4dyg - Crystal Structure of A Family Gh-19 Chitinase From Rye Seeds in Complex With (Glcnac)4
  20. 4dyk - Crystal Structure of An Adenosine Deaminase From Pseudomonas Aeruginosa PAO1 (Target Nysgrc-200449) With Bound Zn
  21. 4dyo - Crystal Structure of Human Aspartyl Aminopeptidase (Dnpep) in Complex With Aspartic Acid Hydroxamate
  22. 4dyu - The Crystal Structure of Dna Starvation/Stationary Phase Protection Protein Dps From Yersinia Pestis Kim 10
  23. 4dzh - Crystal Structure of An Adenosine Deaminase From Xanthomonas Campestris (Target Nysgrc-200456) With Bound Zn
  24. 4e2f - Crystal Structure of E. Coli Aspartate Transcarbamoylase K164E/E239K Mutant in An Intermediate State
  25. 4e2i - The Complex Structure Of the SV40 Helicase Large T Antigen and P68 Subunit of Dna Polymerase Alpha-Primase
  26. 4e2w - X-Ray Structure Of the H181N Mutant of TCAB9, A C-3'- Methyltransferase, in Complex With S-Adenosyl-L-Homocysteine and Sugar Product
  27. 4e2x - X-Ray Structure Of the Y222F Mutant of TCAB9, A C-3'- Methyltransferase, in Complex With S-Adenosyl-L-Homocysteine and Dtdp
  28. 4e2y - X-Ray Structure Of the E224Q Mutant of TCAB9, A C-3'- Methyltransferase, in Complex With S-Adenosyl-L-Homocysteine and Sugar Product
  29. 4e2z - X-Ray Structure Of the H225N Mutant of TCAB9, A C-3'- Methyltransferase, in Complex With S-Adenosyl-L-Homocysteine and Sugar Product
  30. 4e30 - X-Ray Structure Of the H181N/E224Q Double Mutant of TCAB9, A C-3'- Methyltransferase, in Complex With S-Adenosyl-L-Homocysteine and Dtdp
  31. 4e31 - X-Ray Structure Of the Y76F Mutant of TCAB9, A C-3'-Methyltransferase, in Complex With S-Adenosyl-L-Homocysteine and Sugar Product
  32. 4e32 - X-Ray Structure of the C-3'-Methyltransferase TCAB9 in Complex With S- Adenosyl-L-Homocysteine and Dtdp-Sugar Substrate
  33. 4e33 - X-Ray Structure of the C-3'-Methyltransferase TCAB9 in Complex With S- Adenosyl-L-Homocysteine and Reduced Dtdp-Sugar Substrate
  34. 4e3d - Nucleophile Recognition As An Alternative Inhibition Mode For Benzoic Acid Based Carbonic Anhydrase Inhibitors
  35. 4e3f - Nucleophile Recognition As An Alternative Inhibition Mode For Benzoic Acid Based Carbonic Anhydrase Inhibitors
  36. 4e3g - Nucleophile Recognition As An Alternative Inhibition Mode For Benzoic Acid Based Carbonic Anhydrase Inhibitors
  37. 4e3h - Nucleophile Recognition As An Alternative Inhibition Mode For Benzoic Acid Based Carbonic Anhydrase Inhibitors
  38. 4e49 - Nucleophile Recognition As An Alternative Inhibition Mode For Benzoic Acid Based Carbonic Anhydrase Inhibitors
  39. 4e4a - Nucleophile Recognition As An Alternative Inhibition Mode For Benzoic Acid Based Carbonic Anhydrase Inhibitors
  40. 4e5v - Crystal Structure of A Putative Thua-Like Protein (PARMER_02418) From Parabacteroides Merdae Atcc 43184 At 1.75 A Resolution
  41. 4e6r - Crystal Structure of A Cytoplasmic Protein NCK2 (NCK2) From Homo Sapiens At 2.20 A Resolution
  42. 4e7h - Pfv Intasome Prior to 3'-Processing, Apo Form (Ui-Apo)
  43. 4e7i - Pfv Intasome Freeze-Trapped Prior to 3'-Processing, Mn-Bound Form (Ui- Mn)
  44. 4e7j - Pfv Integrase Target Capture Complex, Apo Form (Tcc-Apo), At 3.15 A Resolution
  45. 4e7k - Pfv Integrase Target Capture Complex (Tcc-Mn), Freeze-Trapped Prior to Strand Transfer, At 3.0 A Resolution
  46. 4e7l - Pfv Integrase Strand Transfer Complex (Stc-Mn*) Following Reaction in Crystallo, At 3.0 A Resolution.
  47. 4e7t - The Structure of T6 Bovine Insulin
  48. 4e7u - The Structure of T3R3 Bovine Insulin
  49. 4e7v - The Structure of R6 Bovine Insulin
  50. 4efs - Human MMP12 in Complex With L-Glutamate Motif Inhibitor


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Zinc coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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