Chemical elements
  Zinc
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    Chemical Properties
    PDB 12ca-1ai0
    PDB 1aiy-1b6z
    PDB 1b71-1bs8
    PDB 1bsk-1cao
    PDB 1caq-1ctt
    PDB 1ctu-1de6
    PDB 1def-1dy0
    PDB 1dy1-1ed6
    PDB 1ed8-1exk
    PDB 1eyf-1fj9
    PDB 1fjg-1g0e
    PDB 1g0f-1gkq
    PDB 1gkr-1ha5
    PDB 1hbm-1hso
    PDB 1hsz-1i6v
    PDB 1i73-1im5
    PDB 1iml-1jcv
    PDB 1jcz-1jy8
    PDB 1jyb-1kh4
    PDB 1kh5-1kys
    PDB 1kzo-1llm
    PDB 1llu-1m7j
    PDB 1m9j-1mwo
    PDB 1mwq-1ndv
    PDB 1ndw-1nyq
    PDB 1nyr-1os4
    PDB 1os9-1p9w
    PDB 1paa-1pud
    PDB 1pv8-1q9l
    PDB 1q9m-1qv6
    PDB 1qv7-1r6o
    PDB 1r79-1ro9
    PDB 1ror-1sfo
    PDB 1sg0-1t3k
    PDB 1t4k-1tkh
    PDB 1tkj-1u0l
    PDB 1u10-1ums
    PDB 1umt-1v67
    PDB 1v6g-1vrq
    PDB 1vs0-1wew
    PDB 1wfe-1wwf
    PDB 1wwg-1xb1
    PDB 1xb8-1xpz
    PDB 1xq0-1y5w
    PDB 1y5x-1ylk
    PDB 1ylo-1z8r
    PDB 1z93-1zkx
    PDB 1zl6-258l
    PDB 2a03-2afo
    PDB 2afs-2atq
    PDB 2au3-2bfz
    PDB 2bg2-2c3a
    PDB 2c4r-2cij
    PDB 2cim-2czr
    PDB 2d0w-2djw
    PDB 2dkc-2e1b
    PDB 2e1s-2eer
    PDB 2eex-2em4
    PDB 2em5-2eoj
    PDB 2eok-2erq
    PDB 2esf-2fa7
    PDB 2fac-2fpx
    PDB 2fqp-2g84
    PDB 2g87-2gvf
    PDB 2gvi-2han
    PDB 2hap-2huc
    PDB 2hue-2imc
    PDB 2imr-2j65
    PDB 2j6a-2jq5
    PDB 2jr7-2kfn
    PDB 2kft-2l75
    PDB 2lgv-2nx9
    PDB 2nxa-2oc8
    PDB 2occ-2osm
    PDB 2oso-2p53
    PDB 2p57-2pow
    PDB 2ppb-2q8j
    PDB 2qa1-2qp6
    PDB 2qpj-2r71
    PDB 2r74-2sod
    PDB 2srt-2v86
    PDB 2v87-2vp7
    PDB 2vpb-2vyo
    PDB 2vz5-2wey
    PDB 2wfq-2wx0
    PDB 2wx1-2xam
    PDB 2xan-2xr9
    PDB 2xrg-2ytd
    PDB 2yte-2z30
    PDB 2z3g-2zet
    PDB 2zh0-3a32
    PDB 3a36-3aoi
    PDB 3at1-3bk1
    PDB 3bk2-3byr
    PDB 3byw-3cia
    PDB 3ciz-3d08
    PDB 3d09-3dbu
    PDB 3dc3-3dp6
    PDB 3dpe-3e1w
    PDB 3e1z-3ebh
    PDB 3ebi-3epk
    PDB 3epl-3f28
    PDB 3f2b-3fhe
    PDB 3fhp-3ful
    PDB 3fum-3g9y
    PDB 3ga3-3gpu
    PDB 3gpx-3h2w
    PDB 3h3e-3hfy
    PDB 3hgz-3hsn
    PDB 3hso-3i8v
    PDB 3i9b-3ij6
    PDB 3ijf-3ixe
    PDB 3iz0-3k34
    PDB 3k35-3kiy
    PDB 3kj1-3kvt
    PDB 3kwa-3lat
    PDB 3lcn-3lrr
    PDB 3ls1-3m1n
    PDB 3m1v-3mek
    PDB 3men-3mru
    PDB 3ms0-3n63
    PDB 3n64-3nin
    PDB 3nis-3ny2
    PDB 3ny3-3ohc
    PDB 3ohd-3oyl
    PDB 3oym-3pih
    PDB 3pki-3r0d
    PDB 3rj7-3t74
    PDB 3t87-3u9g
    PDB 3ua7-3v24
      3ua7
      3uct
      3ucy
      3udh
      3udj
      3udk
      3udm
      3udn
      3udp
      3udr
      3udt
      3udy
      3udz
      3uec
      3ued
      3uee
      3uef
      3ueg
      3ueh
      3uei
      3ufo
      3ufp
      3ufq
      3ufr
      3ufs
      3uft
      3ufu
      3ufv
      3ufw
      3ujz
      3ung
      3ur3
      3usn
      3ux3
      3uyd
      3uyf
      3uz3
      3uz4
      3uz6
      3uz7
      3uzg
      3uzi
      3uzl
      3uzm
      3v0a
      3v0b
      3v0c
      3v22
      3v23
      3v24
    PDB 3v25-4agl
    PDB 4agm-4dih
    PDB 4dii-4efs
    PDB 4eg2-4fc8
    PDB 4fgm-6tli
    PDB 6tmn-9nse

Zinc in PDB, part 130 (6451-6500), PDB files 3ua7 - 3v24






Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms.
PDB files 6451-6500 (3ua7 - 3v24):
  1. 3ua7 - Crystal Structure of The Human Fyn SH3 Domain in Complex With A Peptide From the Hepatitis C Virus NS5A-Protein
  2. 3uct - Structure Of MN2+-Bound N-Terminal Domain Of Calmodulin in the Presence of ZN2+
  3. 3ucy - Structure Of MG2+ Bound N-Terminal Domain Of Calmodulin in the Presence of ZN2+
  4. 3udh - Crystal Structure of Bace With Compound 1
  5. 3udj - Crystal Structure of Bace With Compound 5
  6. 3udk - Crystal Structure of Bace With Compound 6
  7. 3udm - Crystal Structure of Bace With Compound 8
  8. 3udn - Crystal Structure of Bace With Compound 9
  9. 3udp - Crystal Structure of Bace With Compound 12
  10. 3udr - Crystal Structure of Bace With Compound 14
  11. 3udt - Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A. Thaliana in Complex With Adp and IP5.
  12. 3udy - Crystal Structure of Bace With Compound 11
  13. 3udz - Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A. Thaliana in Complex With Adp and IP6.
  14. 3uec - Crystal Structure of Human Survivin Bound to Histone H3 Phosphorylated on Threonine-3.
  15. 3ued - Crystal Structure of Human Survivin Bound to Histone H3 Phosphorylated on Threonine-3 (C2 Space Group).
  16. 3uee - Crystal Structure of Human Survivin K62A Mutant Bound to N-Terminal Histone H3
  17. 3uef - Crystal Structure of Human Survivin Bound to Histone H3 (C2 Space Group).
  18. 3ueg - Crystal Structure of Human Survivin K62A Mutant
  19. 3ueh - Crystal Structure of Human Survivin H80A Mutant
  20. 3uei - Crystal Structure of Human Survivin E65A Mutant
  21. 3ufo - Structure of Rat Nitric Oxide Synthase Heme Domain in Complex With 6- (((3S,4S)-4-((5-(3-Fluorophenyl)Pentyl)Oxy)Pyrrolidin-3-Yl)Methyl)-4- Methylpyridin-2-Amine
  22. 3ufp - Structure of Rat Nitric Oxide Synthase Heme Domain in Complex With 6- (((3R,4R)-4-((5-(3-Fluorophenyl)Pentyl)Oxy)Pyrrolidin-3-Yl)Methyl)-4- Methylpyridin-2-Amine
  23. 3ufq - Structure of Rat Nitric Oxide Synthase Heme Domain in Complex With 6- (((3S,4S)-4-(((E)-5-(3-Fluorophenyl)Pent-4-En-1-Yl)Oxy)Pyrrolidin-3- Yl)Methyl)-4-Methylpyridin-2-Amine
  24. 3ufr - Structure of Rat Nitric Oxide Synthase Heme Domain in Complex With 6- (((3R,4R)-4-(((E)-5-(3-Fluorophenyl)Pent-4-En-1-Yl)Oxy)Pyrrolidin-3- Yl)Methyl)-4-Methylpyridin-2-Amine
  25. 3ufs - Structure of Rat Nitric Oxide Synthase Heme Domain in Complex With 6- (((3R,4R)-4-((5-(3-Chloro-5-Fluorophenyl)Pentyl)Oxy)Pyrrolidin-3-Yl) Methyl)-4-Methylpyridin-2-Amine
  26. 3uft - Structure of Rat Nitric Oxide Synthase Heme Domain in Complex With 6- (((3R,4R)-4-(4-(3-Chloro-5-Fluorophenoxy)Butoxy)Pyrrolidin-3-Yl) Methyl)-4-Methylpyridin-2-Amine
  27. 3ufu - Structure of Rat Nitric Oxide Synthase Heme Domain in Complex With 4- Methyl-6-(((3R,4R)-4-((5-(Pyridin-2-Yl)Pentyl)Oxy)Pyrrolidin-3-Yl) Methyl)Pyridin-2-Amine
  28. 3ufv - Structure of Rat Nitric Oxide Synthase Heme Domain in Complex With 4- Methyl-6-(((3R,4R)-4-((5-(4-Methylpyridin-2-Yl)Pentyl)Oxy)Pyrrolidin- 3-Yl)Methyl)Pyridin-2-Amine
  29. 3ufw - Structure of Rat Nitric Oxide Synthase Heme Domain in Complex With 6- (((3R,4R)-4-((5-(6-Aminopyridin-2-Yl)Pentyl)Oxy)Pyrrolidin-3-Yl) Methyl)-4-Methylpyridin-2-Amine
  30. 3ujz - Crystal Structure of Enterohemorrhagic E. Coli Stce
  31. 3ung - Structure Of The CMR2 Subunit of the Crispr Rna Silencing Complex
  32. 3ur3 - Structure Of The CMR2 Subunit of the Crispr Rna Silencing Complex
  33. 3usn - Structure Of The Catalytic Domain of Human Fibroblast Stromelysin-1 Inhibited With the Thiadiazole Inhibitor Ipnu-107859, uc(Nmr), 1 Structure
  34. 3ux3 - Crystal Structure of Domain-Swapped FAM96A Minor Dimer
  35. 3uyd - Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 30S Ribosomal Subunit of The First 70S Molecule in The Asymmetric Unit For the Near-Cognate Trna-Leu Complex
  36. 3uyf - Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 30S Ribosomal Subunit of The First 70S Molecule in The Asymmetric Unit For the Near-Cognate Trna-Leu Complex
  37. 3uz3 - Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 30S Ribosomal Subunit of The First 70S Molecule in The Asymmetric Unit For the Near-Cognate Trna-Leu Complex With Paromomycin.
  38. 3uz4 - Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 30S Ribosomal Subunit of The Second 70S Molecule in The Asymmetric Unit For the Near-Cognate Trna-Leu Complex With Paromomycin.
  39. 3uz6 - Structure Analysis Of Ribosomal Decoding. This Entry Contains The 30S Ribosomal Subunit of The First 70S Molecule in The Asymmetric Unit For the Cognate Trna-Tyr Complex
  40. 3uz7 - Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 30S Ribosomal Subunit of The Second 70S Molecule in The Asymmetric Unit For the Cognate Trna-Tyr Complex.
  41. 3uzg - Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 30S Ribosomal Subunit of The First 70S Molecule in The Asymmetric Unit For the Near-Cognate Trna-Tyr Complex
  42. 3uzi - Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 30S Ribosomal Subunit of The Second 70S Molecule in The Asymmetric Unit For the Near-Cognate Trna-Tyr Complex
  43. 3uzl - Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 30S Ribosomal Subunit of The First 70S Molecule in The Asymmetric Unit For the Near-Cognate Trna-Tyr Complex With Paromomycin
  44. 3uzm - Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 30S Ribosomal Subunit of The First 70S Molecule in The Asymmetric Unit For the Near-Cognate Trna-Tyr Complex With Paromomycin
  45. 3v0a - 2.7 Angstrom Crystal Structure of Bont/Ai in Complex With Ntnha
  46. 3v0b - 3.9 Angstrom Crystal Structure of Bont/Ai in Complex With Ntnha
  47. 3v0c - 4.3 Angstrom Crystal Structure of An Inactive Bont/A (E224Q/R363A/Y366F)
  48. 3v22 - Crystal Structure Of Rmf Bound to The 70S Ribosome. This Pdb Entry Contains Coordinates For The 30S Subunit With Bound Rmf of The 1ST Ribosome in the Asu
  49. 3v23 - Crystal Structure Of Rmf Bound to The 70S Ribosome. This Pdb Entry Contains Coordinates For The 50S Subunit of The 1ST Ribosome in the Asu
  50. 3v24 - Crystal Structure Of Rmf Bound to The 70S Ribosome. This Pdb Entry Contains Coordinates For The 30S Subunit With Bound Rmf of The 2ND Ribosome in the Asu


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Zinc coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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