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Zinc in PDB 5yho: Crystal Structure of Acetolactate Decarboxylase From Enterobacter Cloacae

Enzymatic activity of Crystal Structure of Acetolactate Decarboxylase From Enterobacter Cloacae

All present enzymatic activity of Crystal Structure of Acetolactate Decarboxylase From Enterobacter Cloacae:
4.1.1.5;

Protein crystallography data

The structure of Crystal Structure of Acetolactate Decarboxylase From Enterobacter Cloacae, PDB code: 5yho was solved by F.L.Ji, M.Y.Li, Y.B.Feng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.27 / 2.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.832, 59.981, 80.818, 90.00, 108.17, 90.00
R / Rfree (%) 21.1 / 27.2

Other elements in 5yho:

The structure of Crystal Structure of Acetolactate Decarboxylase From Enterobacter Cloacae also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Acetolactate Decarboxylase From Enterobacter Cloacae (pdb code 5yho). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Acetolactate Decarboxylase From Enterobacter Cloacae, PDB code: 5yho:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5yho

Go back to Zinc Binding Sites List in 5yho
Zinc binding site 1 out of 2 in the Crystal Structure of Acetolactate Decarboxylase From Enterobacter Cloacae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Acetolactate Decarboxylase From Enterobacter Cloacae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:27.6
occ:1.00
ND1 A:HIS212 2.1 26.3 1.0
NE2 A:HIS199 2.1 25.7 1.0
NE2 A:HIS201 2.2 24.8 1.0
O A:HOH458 2.2 31.5 1.0
CL A:CL301 2.7 41.9 1.0
CE1 A:HIS212 2.9 31.5 1.0
CE1 A:HIS199 2.9 25.9 1.0
CD2 A:HIS201 3.0 26.9 1.0
CG A:HIS212 3.2 30.6 1.0
CD2 A:HIS199 3.2 24.7 1.0
CE1 A:HIS201 3.2 26.9 1.0
OE1 A:GLU259 3.6 37.9 1.0
CB A:HIS212 3.6 28.5 1.0
OE1 A:GLU70 3.8 42.0 1.0
NE2 A:HIS212 4.1 28.2 1.0
ND1 A:HIS199 4.1 23.7 1.0
CD2 A:HIS212 4.2 31.2 1.0
CG A:HIS201 4.2 25.9 1.0
CG A:HIS199 4.3 27.9 1.0
ND1 A:HIS201 4.3 26.8 1.0
CD A:GLU70 4.5 41.3 1.0
CA A:HIS212 4.5 25.3 1.0
CD A:GLU259 4.6 44.1 1.0
OE2 A:GLU70 4.7 42.4 1.0
OE2 A:GLU259 4.9 45.9 1.0

Zinc binding site 2 out of 2 in 5yho

Go back to Zinc Binding Sites List in 5yho
Zinc binding site 2 out of 2 in the Crystal Structure of Acetolactate Decarboxylase From Enterobacter Cloacae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Acetolactate Decarboxylase From Enterobacter Cloacae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn300

b:29.4
occ:1.00
NE2 B:HIS199 2.0 30.2 1.0
CL B:CL301 2.1 41.0 1.0
ND1 B:HIS212 2.1 36.7 1.0
NE2 B:HIS201 2.2 26.7 1.0
CE1 B:HIS212 2.8 34.1 1.0
CE1 B:HIS199 2.9 31.7 1.0
CD2 B:HIS201 3.0 26.2 1.0
CG B:HIS212 3.1 32.8 1.0
CD2 B:HIS199 3.1 27.5 1.0
CE1 B:HIS201 3.3 28.9 1.0
O B:HOH438 3.6 44.3 1.0
CB B:HIS212 3.7 30.4 1.0
NE2 B:HIS212 3.9 37.6 1.0
CD2 B:HIS212 4.0 37.7 1.0
OE1 B:GLU70 4.1 40.0 1.0
ND1 B:HIS199 4.1 34.6 1.0
CG B:HIS201 4.2 26.9 1.0
CG B:HIS199 4.2 30.7 1.0
ND1 B:HIS201 4.3 25.7 1.0
CA B:HIS212 4.4 34.1 1.0
CD B:GLU70 4.8 34.9 1.0

Reference:

F.L.Ji, M.Y.Li, Y.B.Feng. Crystal Structure of Acetolactate Decarboxylase From Enterobacter Cloacae To Be Published.
Page generated: Tue Oct 29 10:00:35 2024

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