Chemical elements
  Zinc
    Isotopes
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    Physical Properties
    Chemical Properties
    PDB 12ca-1ai0
    PDB 1aiy-1b6z
    PDB 1b71-1bs8
    PDB 1bsk-1cao
    PDB 1caq-1ctt
    PDB 1ctu-1de6
    PDB 1def-1dy0
    PDB 1dy1-1ed6
    PDB 1ed8-1exk
    PDB 1eyf-1fj9
    PDB 1fjg-1g0e
    PDB 1g0f-1gkq
    PDB 1gkr-1ha5
    PDB 1hbm-1hso
    PDB 1hsz-1i6v
    PDB 1i73-1im5
    PDB 1iml-1jcv
    PDB 1jcz-1jy8
    PDB 1jyb-1kh4
    PDB 1kh5-1kys
    PDB 1kzo-1llm
    PDB 1llu-1m7j
    PDB 1m9j-1mwo
    PDB 1mwq-1ndv
    PDB 1ndw-1nyq
    PDB 1nyr-1os4
    PDB 1os9-1p9w
    PDB 1paa-1pud
    PDB 1pv8-1q9l
    PDB 1q9m-1qv6
    PDB 1qv7-1r6o
    PDB 1r79-1ro9
    PDB 1ror-1sfo
    PDB 1sg0-1t3k
    PDB 1t4k-1tkh
    PDB 1tkj-1u0l
    PDB 1u10-1ums
    PDB 1umt-1v67
    PDB 1v6g-1vrq
    PDB 1vs0-1wew
    PDB 1wfe-1wwf
    PDB 1wwg-1xb1
    PDB 1xb8-1xpz
    PDB 1xq0-1y5w
    PDB 1y5x-1ylk
    PDB 1ylo-1z8r
    PDB 1z93-1zkx
    PDB 1zl6-258l
    PDB 2a03-2afo
    PDB 2afs-2atq
    PDB 2au3-2bfz
    PDB 2bg2-2c3a
    PDB 2c4r-2cij
    PDB 2cim-2czr
    PDB 2d0w-2djw
    PDB 2dkc-2e1b
    PDB 2e1s-2eer
    PDB 2eex-2em4
    PDB 2em5-2eoj
    PDB 2eok-2erq
    PDB 2esf-2fa7
    PDB 2fac-2fpx
    PDB 2fqp-2g84
    PDB 2g87-2gvf
    PDB 2gvi-2han
    PDB 2hap-2huc
    PDB 2hue-2imc
    PDB 2imr-2j65
    PDB 2j6a-2jq5
    PDB 2jr7-2kfn
    PDB 2kft-2l75
    PDB 2lgv-2nx9
    PDB 2nxa-2oc8
    PDB 2occ-2osm
    PDB 2oso-2p53
    PDB 2p57-2pow
    PDB 2ppb-2q8j
    PDB 2qa1-2qp6
    PDB 2qpj-2r71
    PDB 2r74-2sod
    PDB 2srt-2v86
    PDB 2v87-2vp7
    PDB 2vpb-2vyo
    PDB 2vz5-2wey
    PDB 2wfq-2wx0
    PDB 2wx1-2xam
    PDB 2xan-2xr9
    PDB 2xrg-2ytd
    PDB 2yte-2z30
    PDB 2z3g-2zet
    PDB 2zh0-3a32
    PDB 3a36-3aoi
    PDB 3at1-3bk1
    PDB 3bk2-3byr
    PDB 3byw-3cia
    PDB 3ciz-3d08
    PDB 3d09-3dbu
    PDB 3dc3-3dp6
    PDB 3dpe-3e1w
    PDB 3e1z-3ebh
    PDB 3ebi-3epk
    PDB 3epl-3f28
    PDB 3f2b-3fhe
    PDB 3fhp-3ful
    PDB 3fum-3g9y
    PDB 3ga3-3gpu
    PDB 3gpx-3h2w
    PDB 3h3e-3hfy
    PDB 3hgz-3hsn
    PDB 3hso-3i8v
    PDB 3i9b-3ij6
    PDB 3ijf-3ixe
    PDB 3iz0-3k34
      3iz0
      3jpy
      3jr3
      3jr4
      3jr5
      3jru
      3jsd
      3jsi
      3jsw
      3jt3
      3jt4
      3jt5
      3jt6
      3jt7
      3jt8
      3jt9
      3jta
      3ju2
      3jue
      3jv7
      3jvh
      3jwp
      3jwq
      3jwr
      3jws
      3jwt
      3jwu
      3jwv
      3jww
      3jwx
      3jwy
      3jwz
      3jx0
      3jx1
      3jx2
      3jx3
      3jx4
      3jx5
      3jx6
      3jxp
      3jyg
      3jze
      3k0v
      3k14
      3k1f
      3k1l
      3k2f
      3k2g
      3k2x
      3k34
    PDB 3k35-3kiy
    PDB 3kj1-3kvt
    PDB 3kwa-3lat
    PDB 3lcn-3lrr
    PDB 3ls1-3m1n
    PDB 3m1v-3mek
    PDB 3men-3mru
    PDB 3ms0-3n63
    PDB 3n64-3nin
    PDB 3nis-3ny2
    PDB 3ny3-3ohc
    PDB 3ohd-3oyl
    PDB 3oym-3pih
    PDB 3pki-3r0d
    PDB 3rj7-3t74
    PDB 3t87-3u9g
    PDB 3ua7-3v24
    PDB 3v25-4agl
    PDB 4agm-4dih
    PDB 4dii-4efs
    PDB 4eg2-4fc8
    PDB 4fgm-6tli
    PDB 6tmn-9nse

Zinc in PDB, part 113 (5601-5650), PDB files 3iz0 - 3k34






Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms.
PDB files 5601-5650 (3iz0 - 3k34):
  1. 3iz0 - Human NDC80 Bonsai Decorated Microtubule
  2. 3jpy - Crystal Structure Of The Zinc-Bound Amino Terminal Domain of the Nmda Receptor Subunit NR2B
  3. 3jr3 - SIR2 Bound to Acetylated Peptide
  4. 3jr4 - Mutm Interrogating An Extrahelical G
  5. 3jr5 - Mutm Lesion Recognition Control Complex With N174C Crosslinking Site
  6. 3jru - Crystal Structure of Leucyl Aminopeptidase (Pepa) From XOO0834, Xanthomonas Oryzae Pv. Oryzae KACC10331
  7. 3jsd - Insulin'S Biosynthesis and Activity Have Opposing Structural Requirements: A New Factor in Neonatal Diabetes Mellitus
  8. 3jsi - Human Phosphodiesterase 9 in Complex With Inhibitor
  9. 3jsw - Human PDE9 in Complex With Selective Inhibitor
  10. 3jt3 - Structure of Neuronal Nitric Oxide Synthase Heme Domain Complexed With N~5~-[2-(Methylsulfanyl)Ethanimidoyl]-L- Ornithine
  11. 3jt4 - Structure of Neuronal Nitric Oxide Synthase Heme Domain Complexed With N~5~-[(3-(Ethylsulfanyl)Propanimidoyl]-L- Ornithine
  12. 3jt5 - Structure of Neuronal Nitric Oxide Synthase Heme Domain Complexed With N~5~-[2-(Ethylsulfanyl)Ethanimidoyl]-L- Ornithine
  13. 3jt6 - Structure of Neuronal Nitric Oxide Synthase Heme Domain Complexed With N~5~-[4-(Methylsulfanyl)Butanimidoyl]-L- Ornithine
  14. 3jt7 - Structure of Neuronal Nitric Oxide Synthase Heme Domain Complexed With N~5~-[2-(Propylsulfanyl)Ethanimidoyl]-L- Ornithine
  15. 3jt8 - Structure of Neuronal Nitric Oxide Synthase Heme Domain Complexed With N~5~-{3-[(1-Methylethyl) Sulfanyl]Propanimidoyl}-L-Ornithine
  16. 3jt9 - Structure of Neuronal Nitric Oxide Synthase Heme Domain in the Ferrous State Complexed With N~5~-[2-(Ethylsulfanyl) Ethanimidoyl]-L-Ornithine
  17. 3jta - Structure of Neuronal Nitric Oxide Synthase Heme Domain in the Ferrous State Complexed With N~5~-[4-(Methylsulfanyl) Butanimidoyl]-L-Ornithine
  18. 3ju2 - Crystal Structure of Protein SMC04130 From Sinorhizobium Meliloti 1021
  19. 3jue - Crystal Structure Of Arfgap and Ank Repeat Domain of ACAP1
  20. 3jv7 - Structure of Adh-A From Rhodococcus Ruber
  21. 3jvh - Crystal Structure of 2C-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei With Fol Fragment 8395
  22. 3jwp - Crystal Structure of Plasmodium Falciparum SIR2A (PF13_0152) in Complex With Amp
  23. 3jwq - Crystal Structure of Chimeric PDE5/PDE6 Catalytic Domain Complexed With Sildenafil
  24. 3jwr - Crystal Structure of Chimeric PDE5/PDE6 Catalytic Domain Complexed With 3-Isobutyl-1-Methylxanthine (Ibmx) and PDE6 Gamma-Subunit Inhibitory Peptide 70-87.
  25. 3jws - Structure of Neuronal Nitric Oxide Synthase R349A Mutant Heme Domain Complexed With N1-[(3' S,4'S)-4'-((6"-Amino-4"-Methylpyridin-2"-Yl) Methyl)Pyrrolidin-3'-Yl]-N2-(3'-Fluorophenethyl)Ethane-1,2-Diamine Tetrahydrochloride
  26. 3jwt - Structure of Rat Neuronal Nitric Oxide Synthase R349A Mutant Heme Domain in Complex With N1-{(3'R,4'R)-4'-[(6"-Amino-4"-Methylpyridin- 2"-Yl)Methyl]Pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl)Ethane-1,2- Diamine
  27. 3jwu - Structure of Rat Neuronal Nitric Oxide Synthase R349A Mutant Heme Domain in Complex With N1-{(3'R,4'S)-4'-[(6"-Amino-4"-Methylpyridin- 2"-Yl)Methyl]Pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl)Ethane-1,2- Diamine Tetrahydrochloride
  28. 3jwv - Structure of Rat Neuronal Nitric Oxide Synthase R349A Mutant Heme Domain in Complex With N1-{(3'S,4'R)-4'-[(6"-Amino-4"-Methylpyridin- 2"-Yl)Methyl]Pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl)Ethane-1,2- Diamine
  29. 3jww - Structure of Endothelial Nitric Oxide Synthase Heme Domain Complexed With N1-[(3'S,4'S)-4'-((6"-Amino-4"-Methylpyridin-2"-Yl)Methyl) Pyrrolidin-3'-Yl]-N2- (3'-Fluorophenethyl)Ethane-1,2-Diamine Tetrahydrochloride
  30. 3jwx - Structure of Endothelial Nitric Oxide Synthase Heme Domain Complexed With N1-[(3'R,4'R)-4'-((6"-Amino-4"-Methylpyridin-2"-Yl)Methyl) Pyrrolidin-3'-Yl]-N2-(3'-Fluorophenethyl)Ethane-1,2-Diamine Tetrahydrochloride
  31. 3jwy - Structure of Endothelial Nitric Oxide Synthase Heme Domain Complexed With N1-{(3'R,4'S)-4'-[(6"-Amino-4"-Methylpyridin-2"-Yl) Methyl]Pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl)Ethane-1,2-Diamine Tetrahydrochloride
  32. 3jwz - Structure of Endothelial Nitric Oxide Synthase Heme Domain Complexed With N1-[(3' S,4' R)-4'-((6"-Amino-4"-Methylpyridin-2"-Yl)Methyl) Pyrrolidin-3'-Yl]-N2-(3'-Fluorophenethyl)Ethane-1,2-Diamine Tetrahydrochloride
  33. 3jx0 - Structure of Rat Neuronal Nitric Oxide Synthase D597N Mutant Heme Domain in Complex With N1-{(3'S,4'S)-4'-[(6"-Amino-4"-Methylpyridin- 2"-Yl)Methyl]Pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl)Ethane-1,2- Diamine
  34. 3jx1 - Structure of Rat Neuronal Nitric Oxide Synthase D597N Mutant Heme Domain in Complex With N1-{(3'R,4'R)-4'-[(6"-Amino-4"-Methylpyridin- 2"-Yl)Methyl]Pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl)Ethane-1,2- Diamine
  35. 3jx2 - Structure of Rat Neuronal Nitric Oxide Synthase D597N/M336V Mutant Heme Domain in Complex With N1-{(3'S,4'S)-4'-[(6"-Amino-4"- Methylpyridin-2"-Yl)Methyl]Pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl) Ethane-1,2-Diamine
  36. 3jx3 - Structure of Rat Neuronal Nitric Oxide Synthase D597N/M336V Mutant Heme Domain in Complex With N1-{(3'R,4'R)-4'-[(6"-Amino-4"- Methylpyridin-2"-Yl)Methyl]Pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl) Ethane-1,2-Diamine
  37. 3jx4 - Structure of Rat Neuronal Nitric Oxide Synthase D597N/M336V Mutant Heme Domain in Complex With N1-{(3'R,4'S)-4'-[(6"-Amino-4"- Methylpyridin-2"-Yl)Methyl]Pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl) Ethane-1,2-Diamine
  38. 3jx5 - Structure of Rat Neuronal Nitric Oxide Synthase D597N/M336V Mutant Heme Domain in Complex With N1-{(3'S,4'R)-4'-[(6"-Amino-4"- Methylpyridin-2"-Yl)Methyl]Pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl) Ethane-1,2-Diamine
  39. 3jx6 - Structure of Neuronal Nitric Oxide Synthase D597N/M336V/Y706A Mutant Heme Domain Complexed With N1-[(3' R,4' R)-4'-((6"-Amino-4"- Methylpyridin-2"-Yl)Methyl)Pyrrolidin-3'-Yl]-N2-(3'-Fluorophenethyl) Ethane-1,2-Diamine Tetrahydrochloride
  40. 3jxp - Crystal Structure of the Coenzyme Pqq Synthesis Protein (Pqqb) From Pseudomonas Putida
  41. 3jyg - Crystal Structure of Uncharacterized Protein WS1659 From Wolinella Succinogenes
  42. 3jze - 1.8 Angstrom Resolution Crystal Structure of Dihydroorotase (Pyrc) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. LT2
  43. 3k0v - Removal Of Sugars and Sugars-Like Molecules From The Solution By C- Lobe Of Lactoferrin: Crystal Structure Of the Complex of C-Lobe With Beta-D-Glucopyranosyl-(1->4)-Beta-D-Galactopyranosyl-(1->4)-Alpha-D- Glucopyranose At 1.9 A Resolution
  44. 3k14 - Co-Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei With Fol Fragment 535, Ethyl 3-Methyl-5,6-Dihydroimidazo[2,1-B][1,3]Thiazole-2-Carboxylate
  45. 3k1f - Crystal Structure of Rna Polymerase II in Complex With Tfiib
  46. 3k1l - Crystal Structure of Fancl
  47. 3k2f - Nitric Oxide-Donating Carbonic Anhydrase Inhibitors For the Treatment of Open-Angle Glaucoma
  48. 3k2g - Crystal Structure of A Resiniferatoxin-Binding Protein From Rhodobacter Sphaeroides
  49. 3k2x - Crystal Structure of 2C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From Burkholderia Pseudomallei in Complex With 5'-Iodo- Cytosine
  50. 3k34 - Human Carbonic Anhydrase II With A Sulfonamide Inhibitor


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Zinc coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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