Zinc in PDB 4ox3: Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition

The structure of Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition, PDB code: 4ox3 was solved by C.N.Hoyland, C.Aldridge, R.M.Cleverley, K.Sidiq, M.C.Duchene, R.A.Daniel, W.Vollmer, R.J.Lewis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	51.17 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	42.644, 53.695, 102.330, 90.00, 90.00, 90.00
R / Rfree (%)	20.5 / 25.1

The binding sites of Zinc atom in the Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition (pdb code 4ox3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition, PDB code: 4ox3:

Zinc binding site 1 out of 1 in the Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:10.7 occ:0.54 OD1 A:ASP192 2.0 9.4 1.0 O1 A:PO4302 2.0 19.5 1.0 ND1 A:HIS244 2.1 9.9 1.0 NE2 A:HIS185 2.1 12.4 1.0 P A:PO4302 2.6 21.9 1.0 O4 A:PO4302 2.6 28.1 1.0 CG A:ASP192 2.7 8.8 1.0 CE1 A:HIS185 2.8 13.6 1.0 OD2 A:ASP192 2.9 8.7 1.0 CE1 A:HIS244 2.9 9.4 1.0 CG A:HIS244 3.2 8.8 1.0 CD2 A:HIS185 3.4 12.4 1.0 O2 A:PO4302 3.4 26.3 1.0 CB A:HIS244 3.7 8.7 1.0 O3 A:PO4302 3.9 23.4 1.0 ND1 A:HIS185 4.0 12.3 1.0 NE2 A:HIS244 4.1 9.2 1.0 NE1 A:TRP243 4.1 8.8 1.0 CB A:ASP192 4.1 8.5 1.0 CD2 A:HIS244 4.2 9.2 1.0 CG A:HIS185 4.3 11.1 1.0 CD1 A:TRP243 4.4 9.4 1.0 CA A:HIS244 4.4 8.7 1.0 OE1 A:GLU241 4.6 15.8 1.0 N A:ASP192 4.6 7.6 1.0 CA A:ASP192 4.7 8.0 1.0 O A:HOH543 4.7 49.5 1.0

C.N.Hoyland, C.Aldridge, R.M.Cleverley, M.C.Duchene, G.Minasov, O.Onopriyenko, K.Sidiq, P.J.Stogios, W.F.Anderson, R.A.Daniel, A.Savchenko, W.Vollmer, R.J.Lewis. Structure of the Ldcb Ld-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition. Structure V. 22 949 2014.
ISSN: ISSN 0969-2126
PubMed: 24909784
DOI: 10.1016/J.STR.2014.04.015