Zinc in PDB 4lep: Structural Insights Into Substrate Recognition in Proton Dependent Oligopeptide Transporters

The structure of Structural Insights Into Substrate Recognition in Proton Dependent Oligopeptide Transporters, PDB code: 4lep was solved by F.Guettou, E.M.Quistgaard, L.Tresaugues, P.Moberg, C.Jegerschold, L.Zhu, A.J.Jong, P.Nordlund, C.Low, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.86 / 3.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	84.240, 107.730, 205.510, 90.00, 90.00, 90.00
R / Rfree (%)	27.5 / 32.5

The binding sites of Zinc atom in the Structural Insights Into Substrate Recognition in Proton Dependent Oligopeptide Transporters (pdb code 4lep). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structural Insights Into Substrate Recognition in Proton Dependent Oligopeptide Transporters, PDB code: 4lep:

Zinc binding site 1 out of 1 in the Structural Insights Into Substrate Recognition in Proton Dependent Oligopeptide Transporters


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Insights Into Substrate Recognition in Proton Dependent Oligopeptide Transporters within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn602 b:0.2 occ:1.00 ND2 A:ASN468 2.6 0.2 1.0 OD1 A:ASN468 2.9 0.2 1.0 ND2 B:ASN468 2.9 0.0 1.0 OD1 B:ASN468 3.0 0.1 1.0 CG A:ASN468 3.0 0.8 1.0 CG B:ASN468 3.2 0.7 1.0 CE2 A:PHE372 4.0 71.5 1.0 CE2 B:PHE372 4.2 73.0 1.0 O A:ASN468 4.2 79.2 1.0 CD2 A:PHE372 4.3 73.5 1.0 CB A:ASN468 4.4 0.7 1.0 CD2 B:PHE372 4.4 74.5 1.0 CG2 A:VAL472 4.5 73.8 1.0 CZ B:PHE376 4.6 0.1 1.0 CG2 B:VAL472 4.6 74.7 1.0 O B:ASN468 4.6 78.7 1.0 CB B:ASN468 4.6 0.0 1.0 CE2 B:PHE376 4.6 0.7 1.0 CZ A:PHE376 4.7 0.3 1.0 CE2 A:PHE376 4.8 0.3 1.0 CA A:ASN468 4.8 88.8 1.0 C A:ASN468 4.9 79.3 1.0 CZ A:PHE372 4.9 70.5 1.0

F.Guettou, E.M.Quistgaard, L.Tresaugues, P.Moberg, C.Jegerschold, L.Zhu, A.J.Jong, P.Nordlund, C.Low. Structural Insights Into Substrate Recognition in Proton-Dependent Oligopeptide Transporters. Embo Rep. V. 14 804 2013.
ISSN: ISSN 1469-221X
PubMed: 23867627
DOI: 10.1038/EMBOR.2013.107