Chemical elements
  Zinc
    Isotopes
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    Physical Properties
    Chemical Properties
    PDB 12ca-1ai0
    PDB 1aiy-1b6z
    PDB 1b71-1bs8
    PDB 1bsk-1cao
    PDB 1caq-1ctt
    PDB 1ctu-1de6
    PDB 1def-1dy0
    PDB 1dy1-1ed6
    PDB 1ed8-1exk
    PDB 1eyf-1fj9
    PDB 1fjg-1g0e
    PDB 1g0f-1gkq
    PDB 1gkr-1ha5
    PDB 1hbm-1hso
    PDB 1hsz-1i6v
    PDB 1i73-1im5
    PDB 1iml-1jcv
    PDB 1jcz-1jy8
    PDB 1jyb-1kh4
    PDB 1kh5-1kys
    PDB 1kzo-1llm
    PDB 1llu-1m7j
    PDB 1m9j-1mwo
    PDB 1mwq-1ndv
    PDB 1ndw-1nyq
    PDB 1nyr-1os4
    PDB 1os9-1p9w
    PDB 1paa-1pud
    PDB 1pv8-1q9l
    PDB 1q9m-1qv6
    PDB 1qv7-1r6o
    PDB 1r79-1ro9
    PDB 1ror-1sfo
    PDB 1sg0-1t3k
    PDB 1t4k-1tkh
    PDB 1tkj-1u0l
    PDB 1u10-1ums
    PDB 1umt-1v67
    PDB 1v6g-1vrq
    PDB 1vs0-1wew
    PDB 1wfe-1wwf
    PDB 1wwg-1xb1
    PDB 1xb8-1xpz
    PDB 1xq0-1y5w
    PDB 1y5x-1ylk
    PDB 1ylo-1z8r
    PDB 1z93-1zkx
    PDB 1zl6-258l
    PDB 2a03-2afo
    PDB 2afs-2atq
    PDB 2au3-2bfz
    PDB 2bg2-2c3a
    PDB 2c4r-2cij
    PDB 2cim-2czr
    PDB 2d0w-2djw
    PDB 2dkc-2e1b
    PDB 2e1s-2eer
    PDB 2eex-2em4
    PDB 2em5-2eoj
    PDB 2eok-2erq
    PDB 2esf-2fa7
    PDB 2fac-2fpx
    PDB 2fqp-2g84
    PDB 2g87-2gvf
    PDB 2gvi-2han
    PDB 2hap-2huc
    PDB 2hue-2imc
    PDB 2imr-2j65
    PDB 2j6a-2jq5
    PDB 2jr7-2kfn
    PDB 2kft-2l75
    PDB 2lgv-2nx9
    PDB 2nxa-2oc8
    PDB 2occ-2osm
    PDB 2oso-2p53
    PDB 2p57-2pow
    PDB 2ppb-2q8j
    PDB 2qa1-2qp6
    PDB 2qpj-2r71
    PDB 2r74-2sod
    PDB 2srt-2v86
    PDB 2v87-2vp7
    PDB 2vpb-2vyo
    PDB 2vz5-2wey
    PDB 2wfq-2wx0
    PDB 2wx1-2xam
    PDB 2xan-2xr9
    PDB 2xrg-2ytd
    PDB 2yte-2z30
    PDB 2z3g-2zet
    PDB 2zh0-3a32
    PDB 3a36-3aoi
    PDB 3at1-3bk1
    PDB 3bk2-3byr
    PDB 3byw-3cia
    PDB 3ciz-3d08
    PDB 3d09-3dbu
    PDB 3dc3-3dp6
    PDB 3dpe-3e1w
      3dpe
      3dpf
      3dpl
      3dpy
      3dqr
      3dqs
      3dqt
      3dqv
      3dra
      3ds9
      3dse
      3dsl
      3dss
      3dst
      3dsu
      3dsv
      3dsw
      3dsx
      3dti
      3dtk
      3dug
      3dv7
      3dvb
      3dvc
      3dvd
      3dwb
      3dwd
      3dx0
      3dx1
      3dx2
      3dx3
      3dx4
      3dxj
      3dxs
      3dxt
      3dxu
      3dyc
      3dyn
      3dza
      3dzu
      3dzy
      3e00
      3e02
      3e0f
      3e0l
      3e1o
      3e1p
      3e1u
      3e1v
      3e1w
    PDB 3e1z-3ebh
    PDB 3ebi-3epk
    PDB 3epl-3f28
    PDB 3f2b-3fhe
    PDB 3fhp-3ful
    PDB 3fum-3g9y
    PDB 3ga3-3gpu
    PDB 3gpx-3h2w
    PDB 3h3e-3hfy
    PDB 3hgz-3hsn
    PDB 3hso-3i8v
    PDB 3i9b-3ij6
    PDB 3ijf-3ixe
    PDB 3iz0-3k34
    PDB 3k35-3kiy
    PDB 3kj1-3kvt
    PDB 3kwa-3lat
    PDB 3lcn-3lrr
    PDB 3ls1-3m1n
    PDB 3m1v-3mek
    PDB 3men-3mru
    PDB 3ms0-3n63
    PDB 3n64-3nin
    PDB 3nis-3ny2
    PDB 3ny3-3ohc
    PDB 3ohd-3oyl
    PDB 3oym-3pih
    PDB 3pki-3r0d
    PDB 3rj7-3t74
    PDB 3t87-3u9g
    PDB 3ua7-3v24
    PDB 3v25-4agl
    PDB 4agm-4dih
    PDB 4dii-4efs
    PDB 4eg2-4fc8
    PDB 4fgm-6tli
    PDB 6tmn-9nse

Zinc in PDB, part 99 (4901-4950), PDB files 3dpe - 3e1w






Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms.
PDB files 4901-4950 (3dpe - 3e1w):
  1. 3dpe - Crystal Structure of the Complex Between Mmp-8 and A Non- Zinc Chelating Inhibitor
  2. 3dpf - Crystal Structure of the Complex Between Mmp-8 and A Non- Zinc Chelating Inhibitor
  3. 3dpl - Structural Insights Into NEDD8 Activation Of Cullin-Ring Ligases: Conformational Control of Conjugation.
  4. 3dpy - Protein Farnesyltransferase Complexed With Fpp and Caged Tkcvim Substrate
  5. 3dqr - Structure of Neuronal Nos D597N/M336V Mutant Heme Domain in Complex With A Inhibitor (+-)-N1-{Cis-4'-[(6"-Aminopyridin- 2"-Yl)Methyl]Pyrrolidin-3'-Yl}Ethane-1,2-Diamine
  6. 3dqs - Structure of Endothelial Nos Heme Domain in Complex With A Inhibitor (+-)-N1-{Cis-4'-[(6"-Amino-4"-Methylpyridin-2"-Yl)Methyl]Pyrrolidin- 3'-Yl}-N2-(4'-Chlorobenzyl)Ethane-1,2-Diamine
  7. 3dqt - Structure of Endothelial Nos Heme Domain in Complex With A Inhibitor (+-)-N1-{Trans-4'-[(6"-Amino-4"-Methylpyridin-2"-Yl) Methyl]Pyrrolidin-3'-Yl}-N2-(3'-Chlorobenzyl)Ethane-1,2-Diamine
  8. 3dqv - Structural Insights Into NEDD8 Activation Of Cullin-Ring Ligases: Conformational Control of Conjugation
  9. 3dra - Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp
  10. 3ds9 - A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate
  11. 3dse - A Potent Peptidomimetic Inhibitor of Botulinum Neurotoxin Serotype A Has A Very Different Conformation Than Snap-25 Substrate
  12. 3dsl - The Three-Dimensional Structure of Bothropasin, the Main Hemorrhagic Factor From Bothrops Jararaca Venom.
  13. 3dss - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)
  14. 3dst - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex With Geranylgeranyl Pyrophosphate
  15. 3dsu - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex With Farnesyl Pyrophosphate
  16. 3dsv - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg) Derivated From RAB7
  17. 3dsw - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys Derivated From RAB7
  18. 3dsx - Crystal Structure of Rabggtase(Delta Lrr; Delta Ig)in Complex With Di-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From RAB7
  19. 3dti - Crystal Structure Of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae
  20. 3dtk - Crystal Structure Of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae
  21. 3dug - Crystal Structure of Zn-Dependent Arginine Carboxypeptidase Complexed With Zinc
  22. 3dv7 - Role of Hydrophilic Residues in Proton Transfer During Catalysis By Human Carbonic Anhydrase II (N62A)
  23. 3dvb - X-Ray Crystal Structure of Mutant N62V Human Carbonic Anhydrase II
  24. 3dvc - X-Ray Crystal Structure Of Mutant N62T of Human Carbonic Anhydrase II
  25. 3dvd - X-Ray Crystal Structure Of Mutant N62D of Human Carbonic Anhydrase II
  26. 3dwb - Structure of Human Ece-1 Complexed With Phosphoramidon
  27. 3dwd - Crystal Structure Of the Arfgap Domain of Human ARFGAP1
  28. 3dx0 - Golgi Alpha-Mannosidase II in Complex With Mannostatin A At pH 5.75
  29. 3dx1 - Golgi Alpha-Mannosidase II in Complex With Mannostatin Analog (1S,2S, 3R,4R)-4-Aminocyclopentane-1,2,3-Triol
  30. 3dx2 - Golgi Mannosidase II Complex With Mannostatin B
  31. 3dx3 - Golgi Alpha-Mannosidase II in Complex With Mannostatin Analog (1R,2R, 3S,4R,5R)-5-Aminocyclopentane-1,2,3,4-Tetraol
  32. 3dx4 - Golgi Alpha-Mannosidase II in Complex With Mannostatin Analog (1R,2R, 3R,4S,5R)-4-Amino-5-Methoxycyclopentane-1,2,3-Triol
  33. 3dxj - Crystal Structure of Thermus Thermophilus Rna Polymerase Holoenzyme in Complex With the Antibiotic Myxopyronin
  34. 3dxs - Crystal Structure of A Copper Binding Domain From HMA7, A P- Type Atpase
  35. 3dxt - Crystal Structure Of the Catalytic Core Domain of JMJD2D
  36. 3dxu - The Crystal Structure of Core JMJD2D Complexed With Fe and N- Oxalylglycine
  37. 3dyc - Structure of E322Y Alkaline Phosphatase in Complex With Inorganic Phosphate
  38. 3dyn - Human Phosphodiestrase 9 in Complex With Cgmp (Zn Inhibited)
  39. 3dza - Crystal Structure Of A Putative Membrane Protein of Unknown Function (Yfdx) From Klebsiella Pneumoniae Subsp. At 1.65 A Resolution
  40. 3dzu - Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex on Dna Bound With Bvt.13, 9-Cis Retinoic Acid and NCOA2 Peptide
  41. 3dzy - Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex on Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid and NCOA2 Peptide
  42. 3e00 - Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex on Dna Bound With GW9662, 9-Cis Retinoic Acid and NCOA2 Peptide
  43. 3e02 - Crystal Structure of A DUF849 Family Protein (BXE_C0271) From Burkholderia Xenovorans LB400 At 1.90 A Resolution
  44. 3e0f - Crystal Structure of A Putative Metal-Dependent Phosphoesterase (BAD_1165) From Bifidobacterium Adolescentis Atcc 15703 At 2.40 A Resolution
  45. 3e0l - Computationally Designed Ammelide Deaminase
  46. 3e1o - Crystal Structure of E. Coli Bacterioferritin (Bfr) With Two Zn(II) Ion Sites At the Ferroxidase Centre (Zn-Bfr).
  47. 3e1p - Crystal Structure of E. Coli Bacterioferritin (Bfr) in Which The Ferroxidase Centre Is Inhibited With Zn(II) and High Occupancy Iron Is Bound Within the Cavity.
  48. 3e1u - The Crystal Structure of the Anti-Viral APOBEC3G Catalytic Domain
  49. 3e1v - H. Influenzae Beta-Carbonic Anhydrase, Variant D44N
  50. 3e1w - H. Influenzae Beta-Carbonic Anhydrase, Variant D44N in 100 Mm Sodium Bicarbonate


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Zinc coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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