Chemical elements
  Zinc
    Isotopes
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    Physical Properties
    Chemical Properties
    PDB 12ca-1ai0
    PDB 1aiy-1b6z
    PDB 1b71-1bs8
    PDB 1bsk-1cao
    PDB 1caq-1ctt
    PDB 1ctu-1de6
    PDB 1def-1dy0
    PDB 1dy1-1ed6
    PDB 1ed8-1exk
    PDB 1eyf-1fj9
    PDB 1fjg-1g0e
    PDB 1g0f-1gkq
    PDB 1gkr-1ha5
    PDB 1hbm-1hso
    PDB 1hsz-1i6v
    PDB 1i73-1im5
    PDB 1iml-1jcv
    PDB 1jcz-1jy8
    PDB 1jyb-1kh4
    PDB 1kh5-1kys
    PDB 1kzo-1llm
    PDB 1llu-1m7j
    PDB 1m9j-1mwo
    PDB 1mwq-1ndv
    PDB 1ndw-1nyq
    PDB 1nyr-1os4
    PDB 1os9-1p9w
    PDB 1paa-1pud
    PDB 1pv8-1q9l
    PDB 1q9m-1qv6
    PDB 1qv7-1r6o
    PDB 1r79-1ro9
    PDB 1ror-1sfo
    PDB 1sg0-1t3k
    PDB 1t4k-1tkh
    PDB 1tkj-1u0l
    PDB 1u10-1ums
    PDB 1umt-1v67
    PDB 1v6g-1vrq
    PDB 1vs0-1wew
    PDB 1wfe-1wwf
    PDB 1wwg-1xb1
    PDB 1xb8-1xpz
    PDB 1xq0-1y5w
    PDB 1y5x-1ylk
    PDB 1ylo-1z8r
    PDB 1z93-1zkx
    PDB 1zl6-258l
    PDB 2a03-2afo
    PDB 2afs-2atq
    PDB 2au3-2bfz
    PDB 2bg2-2c3a
    PDB 2c4r-2cij
    PDB 2cim-2czr
    PDB 2d0w-2djw
    PDB 2dkc-2e1b
    PDB 2e1s-2eer
    PDB 2eex-2em4
    PDB 2em5-2eoj
    PDB 2eok-2erq
    PDB 2esf-2fa7
    PDB 2fac-2fpx
    PDB 2fqp-2g84
    PDB 2g87-2gvf
    PDB 2gvi-2han
    PDB 2hap-2huc
    PDB 2hue-2imc
    PDB 2imr-2j65
    PDB 2j6a-2jq5
    PDB 2jr7-2kfn
    PDB 2kft-2l75
    PDB 2lgv-2nx9
    PDB 2nxa-2oc8
    PDB 2occ-2osm
    PDB 2oso-2p53
    PDB 2p57-2pow
    PDB 2ppb-2q8j
    PDB 2qa1-2qp6
    PDB 2qpj-2r71
    PDB 2r74-2sod
    PDB 2srt-2v86
    PDB 2v87-2vp7
    PDB 2vpb-2vyo
    PDB 2vz5-2wey
    PDB 2wfq-2wx0
    PDB 2wx1-2xam
    PDB 2xan-2xr9
    PDB 2xrg-2ytd
    PDB 2yte-2z30
    PDB 2z3g-2zet
    PDB 2zh0-3a32
    PDB 3a36-3aoi
    PDB 3at1-3bk1
    PDB 3bk2-3byr
    PDB 3byw-3cia
    PDB 3ciz-3d08
    PDB 3d09-3dbu
    PDB 3dc3-3dp6
      3dc3
      3dc8
      3dc9
      3dcc
      3dci
      3dco
      3dcp
      3dcs
      3dcw
      3dd0
      3dd8
      3dda
      3ddb
      3ddf
      3ddg
      3ddt
      3df2
      3df4
      3dff
      3dfi
      3dfk
      3dfm
      3dfv
      3dfx
      3dgd
      3dgl
      3dgm
      3dgn
      3dgo
      3dgv
      3dh1
      3dha
      3dhb
      3dhc
      3di4
      3did
      3dkv
      3dl0
      3dlj
      3dll
      3dln
      3dmo
      3dng
      3dnz
      3do0
      3do1
      3do2
      3dow
      3dp4
      3dp6
    PDB 3dpe-3e1w
    PDB 3e1z-3ebh
    PDB 3ebi-3epk
    PDB 3epl-3f28
    PDB 3f2b-3fhe
    PDB 3fhp-3ful
    PDB 3fum-3g9y
    PDB 3ga3-3gpu
    PDB 3gpx-3h2w
    PDB 3h3e-3hfy
    PDB 3hgz-3hsn
    PDB 3hso-3i8v
    PDB 3i9b-3ij6
    PDB 3ijf-3ixe
    PDB 3iz0-3k34
    PDB 3k35-3kiy
    PDB 3kj1-3kvt
    PDB 3kwa-3lat
    PDB 3lcn-3lrr
    PDB 3ls1-3m1n
    PDB 3m1v-3mek
    PDB 3men-3mru
    PDB 3ms0-3n63
    PDB 3n64-3nin
    PDB 3nis-3ny2
    PDB 3ny3-3ohc
    PDB 3ohd-3oyl
    PDB 3oym-3pih
    PDB 3pki-3r0d
    PDB 3rj7-3t74
    PDB 3t87-3u9g
    PDB 3ua7-3v24
    PDB 3v25-4agl
    PDB 4agm-4dih
    PDB 4dii-4efs
    PDB 4eg2-4fc8
    PDB 4fgm-6tli
    PDB 6tmn-9nse

Zinc in PDB, part 98 (4851-4900), PDB files 3dc3 - 3dp6






Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms.
PDB files 4851-4900 (3dc3 - 3dp6):
  1. 3dc3 - Use Of Carbonic Anhydrase II, IX Active-Site Mimic, For the Purpose of Screening Inhibitors For Possible Anti-Cancer Properties
  2. 3dc8 - Crystal Structure of Dihydropyrimidinase From Sinorhizobium Meliloti
  3. 3dc9 - Use Of Carbonic Anhydrase II, IX Active-Site Mimic, For the Purpose of Screening Inhibitors For Possible Anti-Cancer Properties
  4. 3dcc - Use Of Carbonic Anhydrase II, IX Active-Site Mimic, For the Purpose of Screening Inhibitors For Possible Anti-Cancer Properties
  5. 3dci - The Structure of A Putative Arylesterase From Agrobacterium Tumefaciens Str. C58
  6. 3dco - Drosophila Nod (3DC4) and Bovine Tubulin (1JFF) Docked Into The 11-Angstrom Cryo-Em Map of Nucleotide-Free Nod Complexed to the Microtubule
  7. 3dcp - Crystal Structure of the Putative Histidinol Phosphatase Hisk From Listeria Monocytogenes. Northeast Structural Genomics Consortium Target LMR141.
  8. 3dcs - Use Of Carbonic Anhydrase II, IX Active-Site Mimic, For the Purpose of Screening Inhibitors For Possible Anti-Cancer Properties
  9. 3dcw - Use Of Carbonic Anhydrase II, IX Active-Site Mimic, For the Purpose of Screening Inhibitors For Possible Anti-Cancer Properties
  10. 3dd0 - Use Of Carbonic Anhydrase II, IX Active-Site Mimic, For the Purpose of Screening Inhibitors For Possible Anti-Cancer Properties
  11. 3dd8 - Carbonic Anhydrase Inhibitors. Interaction of the Antitumor Sulfamate Emd-486019 With Twelve Mammalian Isoforms: Kinetic and X-Ray Crystallographic Studies
  12. 3dda - Crystal Structure Of the Catalytic Domain of Botulinum Neurotoxin Serotype A With A Snap-25 Peptide
  13. 3ddb - Crystal Structure Of the Catalytic Domain of Botulinum Neurotoxin Serotype A With A Substrate Analog Peptide
  14. 3ddf - Golgi Mannosidase II Complex With (3R,4R,5R)-3,4-Dihydroxy-5-({[(1R)- 2-Hydroxy-1 Phenylethyl]Amino}Methyl) Pyrrolidin-2-One
  15. 3ddg - Golgi Mannosidase II Complex With (3R,4R,5R)-3,4-Dihydroxy-5-({[(1R)- 2-Hydroxy-1 Phenylethyl]Amino}Methyl) Methylpyrrolidin-2-One
  16. 3ddt - Crystal Structure of the B2 Box From MURF1 in Dimeric State
  17. 3df2 - Crystal Structure Of The Bacterial Ribosome From Escherichia Coli in Complex With Hygromycin B. This File Contains The 50S Subunit of The First 70S Ribosome. the Entire Crystal Structure Contains Two 70S Ribosomes.
  18. 3df4 - Crystal Structure Of The Bacterial Ribosome From Escherichia Coli in Complex With Hygromycin B. This File Contains The 50S Subunit of The Second 70S Ribosome. the Entire Crystal Structure Contains Two 70S Ribosomes.
  19. 3dff - The Crystal Structure of Teicoplanin Pseudoaglycone Deacetylase ORF2
  20. 3dfi - The Crystal Structure of Antimicrobial Reagent A40926 Pseudoaglycone Deacetylase DBV21
  21. 3dfk - The Crystal Structure Of Teicoplanin Pseudoaglycone Deacetylase ORF2* Bound to One of Its Products Decanoic Acid
  22. 3dfm - The Crystal Structure Of the Zinc Inhibited Form of Teicoplanin Deacetylase ORF2
  23. 3dfv - Adjacent Gata Dna Binding
  24. 3dfx - Opposite Gata Dna Binding
  25. 3dgd - Crystal Structure Of the F87M/L110M Mutant of Human Transthyretin At pH 4.6
  26. 3dgl - 1.8 A Crystal Structure of A Non-Biological Protein With Bound Atp in A Novel Bent Conformation
  27. 3dgm - 2.4 A Structure of A Non-Biological Atp Binding Protein With Adp Bound
  28. 3dgn - A Non-Biological Atp Binding Protein Crystallized in the Presence of 100 Mm Adp
  29. 3dgo - A Non-Biological Atp Binding Protein With A Tyr-Phe Mutation in the Ligand Binding Domain
  30. 3dgv - Crystal Structure of Thrombin Activatable Fibrinolysis Inhibitor (Tafi)
  31. 3dh1 - Crystal Structure of Human Trna-Specific Adenosine-34 Deaminase Subunit ADAT2
  32. 3dha - An Ultral High Resolution Structure of N-Acyl Homoserine Lactone Hydrolase With the Product N-Hexanoyl-L-Homoserine Bound At An Alternative Site
  33. 3dhb - 1.4 Angstrom Structure of N-Acyl Homoserine Lactone Hydrolase With The Product N-Hexanoyl-L-Homoserine Bound At the Catalytic Metal Center
  34. 3dhc - 1.3 Angstrom Structure of N-Acyl Homoserine Lactone Hydrolase With The Product N-Hexanoyl-L-Homocysteine Bound to the Catalytic Metal Center
  35. 3di4 - Crystal Structure of A DUF1989 Family Protein (SPO0365) From Silicibacter Pomeroyi Dss-3 At 1.60 A Resolution
  36. 3did - Crystal Structure Of the F87M/L110M Mutant of Human Transthyretin At pH 4.6 Soaked
  37. 3dkv - Crystal Structure of Adenylate Kinase Variant AKLSE1
  38. 3dl0 - Crystal Structure of Adenylate Kinase Variant AKLSE3
  39. 3dlj - Crystal Structure of Human Carnosine Dipeptidase 1
  40. 3dll - The Oxazolidinone Antibiotics Perturb the Ribosomal Peptidyl-Transferase Center and Effect Trna Positioning
  41. 3dln - Crystal Structure Of The Binding Domain of the Ampa Subunit GLUR3 Bound to Glutamate
  42. 3dmo - 1.6 A Crystal Structure of Cytidine Deaminase From Burkholderia Pseudomallei
  43. 3dng - Crystal Structure of the Complex Between Mmp-8 and A Non- Zinc Chelating Inhibitor
  44. 3dnz - Thermolysin By Lb Nanotemplate Method Before High X-Ray Dose on Esrf ID14-2 Beamline
  45. 3do0 - Thermolysin By Classical Hanging Drop Method After High X- Ray Dose on Esrf ID14-2 Beamline
  46. 3do1 - Thermolysin By Classical Hanging Drop Method Before High X- Ray Dose on Esrf ID14-2 Beamline
  47. 3do2 - Thermolysin By Lb Nanotemplate Method After High X-Ray Dose on Esrf ID14-2 Beamline
  48. 3dow - Complex Structure of Gaba Type A Receptor Associated Protein and Its Binding Epitope on Calreticulin
  49. 3dp4 - Crystal Structure Of The Binding Domain of the Ampa Subunit GLUR3 Bound to Ampa
  50. 3dp6 - Crystal Structure Of The Binding Domain of the Ampa Subunit GLUR2 Bound to Glutamate


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Zinc coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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