Chemical elements
  Zinc
    Isotopes
    Energy
    Production
    Application
    Physical Properties
    Chemical Properties
    PDB 12ca-1ai0
    PDB 1aiy-1b6z
    PDB 1b71-1bs8
    PDB 1bsk-1cao
    PDB 1caq-1ctt
    PDB 1ctu-1de6
    PDB 1def-1dy0
    PDB 1dy1-1ed6
    PDB 1ed8-1exk
    PDB 1eyf-1fj9
    PDB 1fjg-1g0e
    PDB 1g0f-1gkq
    PDB 1gkr-1ha5
    PDB 1hbm-1hso
    PDB 1hsz-1i6v
    PDB 1i73-1im5
    PDB 1iml-1jcv
    PDB 1jcz-1jy8
    PDB 1jyb-1kh4
    PDB 1kh5-1kys
    PDB 1kzo-1llm
    PDB 1llu-1m7j
    PDB 1m9j-1mwo
    PDB 1mwq-1ndv
    PDB 1ndw-1nyq
    PDB 1nyr-1os4
    PDB 1os9-1p9w
    PDB 1paa-1pud
    PDB 1pv8-1q9l
    PDB 1q9m-1qv6
    PDB 1qv7-1r6o
    PDB 1r79-1ro9
    PDB 1ror-1sfo
    PDB 1sg0-1t3k
    PDB 1t4k-1tkh
    PDB 1tkj-1u0l
    PDB 1u10-1ums
    PDB 1umt-1v67
    PDB 1v6g-1vrq
    PDB 1vs0-1wew
    PDB 1wfe-1wwf
    PDB 1wwg-1xb1
    PDB 1xb8-1xpz
    PDB 1xq0-1y5w
    PDB 1y5x-1ylk
    PDB 1ylo-1z8r
    PDB 1z93-1zkx
    PDB 1zl6-258l
    PDB 2a03-2afo
    PDB 2afs-2atq
    PDB 2au3-2bfz
    PDB 2bg2-2c3a
    PDB 2c4r-2cij
    PDB 2cim-2czr
    PDB 2d0w-2djw
    PDB 2dkc-2e1b
    PDB 2e1s-2eer
    PDB 2eex-2em4
    PDB 2em5-2eoj
    PDB 2eok-2erq
    PDB 2esf-2fa7
    PDB 2fac-2fpx
    PDB 2fqp-2g84
    PDB 2g87-2gvf
    PDB 2gvi-2han
    PDB 2hap-2huc
    PDB 2hue-2imc
    PDB 2imr-2j65
    PDB 2j6a-2jq5
    PDB 2jr7-2kfn
    PDB 2kft-2l75
    PDB 2lgv-2nx9
    PDB 2nxa-2oc8
    PDB 2occ-2osm
    PDB 2oso-2p53
    PDB 2p57-2pow
    PDB 2ppb-2q8j
    PDB 2qa1-2qp6
    PDB 2qpj-2r71
    PDB 2r74-2sod
    PDB 2srt-2v86
    PDB 2v87-2vp7
    PDB 2vpb-2vyo
    PDB 2vz5-2wey
    PDB 2wfq-2wx0
    PDB 2wx1-2xam
    PDB 2xan-2xr9
    PDB 2xrg-2ytd
    PDB 2yte-2z30
    PDB 2z3g-2zet
    PDB 2zh0-3a32
    PDB 3a36-3aoi
    PDB 3at1-3bk1
    PDB 3bk2-3byr
    PDB 3byw-3cia
    PDB 3ciz-3d08
    PDB 3d09-3dbu
      3d09
      3d0a
      3d0g
      3d0h
      3d0i
      3d0n
      3d0y
      3d10
      3d1m
      3d1t
      3d2n
      3d2q
      3d2s
      3d2z
      3d3p
      3d3x
      3d4b
      3d4u
      3d4y
      3d4z
      3d50
      3d51
      3d52
      3d5a
      3d5c
      3d66
      3d67
      3d68
      3d6n
      3d71
      3d7d
      3d7f
      3d7g
      3d7h
      3d7s
      3d7v
      3d81
      3d8c
      3d8w
      3d92
      3d9t
      3d9u
      3d9z
      3da2
      3daz
      3dbh
      3dbk
      3dbl
      3dbr
      3dbu
    PDB 3dc3-3dp6
    PDB 3dpe-3e1w
    PDB 3e1z-3ebh
    PDB 3ebi-3epk
    PDB 3epl-3f28
    PDB 3f2b-3fhe
    PDB 3fhp-3ful
    PDB 3fum-3g9y
    PDB 3ga3-3gpu
    PDB 3gpx-3h2w
    PDB 3h3e-3hfy
    PDB 3hgz-3hsn
    PDB 3hso-3i8v
    PDB 3i9b-3ij6
    PDB 3ijf-3ixe
    PDB 3iz0-3k34
    PDB 3k35-3kiy
    PDB 3kj1-3kvt
    PDB 3kwa-3lat
    PDB 3lcn-3lrr
    PDB 3ls1-3m1n
    PDB 3m1v-3mek
    PDB 3men-3mru
    PDB 3ms0-3n63
    PDB 3n64-3nin
    PDB 3nis-3ny2
    PDB 3ny3-3ohc
    PDB 3ohd-3oyl
    PDB 3oym-3pih
    PDB 3pki-3r0d
    PDB 3rj7-3t74
    PDB 3t87-3u9g
    PDB 3ua7-3v24
    PDB 3v25-4agl
    PDB 4agm-4dih
    PDB 4dii-4efs
    PDB 4eg2-4fc8
    PDB 4fgm-6tli
    PDB 6tmn-9nse

Zinc in PDB, part 97 (4801-4850), PDB files 3d09 - 3dbu






Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms.
PDB files 4801-4850 (3d09 - 3dbu):
  1. 3d09 - Human P53 Core Domain With Hot Spot Mutation R249S And Second-Site Suppressor Mutations H168R and T123A
  2. 3d0a - Human P53 Core Domain With Hot Spot Mutation R249S and Second Site Suppressor Mutation H168R in Sequence-Specific Complex With Dna
  3. 3d0g - Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Human Strain Complexed With Human-Civet Chimeric Receptor ACE2
  4. 3d0h - Crystal Structure of Spike Protein Receptor-Binding Domain From the 2002-2003 Sars Coronavirus Civet Strain Complexed With Human-Civet Chimeric Receptor ACE2
  5. 3d0i - Crystal Structure of Spike Protein Receptor-Binding Domain From the 2005-2006 Sars Coronavirus Civet Strain Complexed With Human-Civet Chimeric Receptor ACE2
  6. 3d0n - Crystal Structure of Human Carbonic Anhydrase XIII
  7. 3d0y - Crystal Structure of S100B in the Calcium and Zinc Loaded State At pH 6.5
  8. 3d10 - Crystal Structure of S100B in the Calcium and Zinc Loaded State At pH 10.0
  9. 3d1m - Crystal Structure Of Sonic Hedgehog Bound to the Third Fniii Domain of Cdo
  10. 3d1t - Crystal Structure of Gcyh-Ib
  11. 3d2n - Crystal Structure of MBNL1 Tandem Zinc Finger 1 and 2 Domain
  12. 3d2q - Crystal Structure of MBNL1 Tandem Zinc Finger 3 and 4 Domain
  13. 3d2s - Crystal Structure of MBNL1 Tandem Zinc Finger 3 and 4 Domain in Complex With Cgcugu Rna
  14. 3d2z - Complex of The N-Acetylmuramyl-L-Alanine Amidase Amid From E.Coli With the Product L-Ala-D-Gamma-Glu-L-Lys
  15. 3d3p - Crystal Structure of PDE4B Catalytic Domain in Complex With A Pyrazolopyridine Inhibitor
  16. 3d3x - Crystal Structure of Botulinum Neurotoxin Serotype E Catalytic Domain in Complex With Snap-25 Substrate Peptide
  17. 3d4b - Crystal Structure of SIR2TM in Complex With Acetyl P53 Peptide and Dadme-Nad+
  18. 3d4u - Bovine Thrombin-Activatable Fibrinolysis Inhibitor (Tafia) in Complex With Tick-Derived Carboxypeptidase Inhibitor.
  19. 3d4y - Golgi Mannosidase II Complex With Mannoimidazole
  20. 3d4z - Golgi Mannosidase II Complex With Gluco-Imidazole
  21. 3d50 - Golgi Mannosidase II Complex With N-Octyl-6-Epi-Valienamine
  22. 3d51 - Golgi Mannosidase II Complex With Gluco-Hydroxyiminolactam
  23. 3d52 - Golgi Mannosidase II Complex With An N-Aryl Carbamate Derivative of Gluco-Hydroxyiminolactam
  24. 3d5a - Structural Basis For Translation Termination on The 70S Ribosome. This File Contains The 30S Subunit, Release Factor 1 (RF1), Two Trna, and Mrna Molecules of One 70S Ribosome. the Entire Crystal Structure Contains Two 70S Ribosomes As Described in Remark 400.
  25. 3d5c - Structural Basis For Translation Termination on The 70S Ribosome. This File Contains The 30S Subunit, Release Factor 1 (RF1), Two Trna, and Mrna Molecules of The Second 70S Ribosome. the Entire Crystal Structure Contains Two 70S Ribosomes As Described in Remark 400.
  26. 3d66 - Crystal Structure of Thrombin-Activatable Fibrinolysis Inhibitor (Tafi)
  27. 3d67 - Crystal Structure of Thrombin-Activatable Fibrinolysis Inhibitor (Tafi) in Complex With 2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
  28. 3d68 - Crystal Structure Of A T325I/T329I/H333Y/H335Q Mutant of Thrombin- Activatable Fibrinolysis Inhibitor (Tafi-Iiyq)
  29. 3d6n - Crystal Structure of Aquifex Dihydroorotase Activated By Aspartate Transcarbamoylase
  30. 3d71 - Crystal Structure of E253Q Bmrr Bound to 22 Base Pair Promoter Site
  31. 3d7d - A High Resolution Crystal Structure of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex With Dcfbd, A Urea-Based Inhibitor
  32. 3d7f - A High Resolution Crystal Structure of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex With Dcit, A Urea-Based Inhibitor
  33. 3d7g - A High Resolution Crystal Structure of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex With Dcmc, A Urea-Based Inhibitor
  34. 3d7h - A High Resolution Crystal Structure of Human Glutamate Carboxypeptidase II (Gcpii) in A Complex With Dcibzl, A Urea-Based Inhibitor
  35. 3d7s - Crystal Structure of Wild-Type E. Coli Asparate Transcarbamoylase At pH 8.5 At 2.80 A Resolution
  36. 3d7v - Crystal Structure of Mcl-1 in Complex With An Mcl-1 Selective BH3 Ligand
  37. 3d81 - SIR2-S-Alkylamidate Complex Crystal Structure
  38. 3d8c - Factor Inhibiting Hif-1 Alpha D201G Mutant in Complex With Zn(II), Alpha-Ketoglutarate and Hif-1 Alpha 19MER
  39. 3d8w - Use Of A Carbonic Anhydrase II, IX Active-Site Mimic, For the Purpose of Screening Inhibitors For Possible Anti- Cancer Properties
  40. 3d92 - Human Carbonic Anhydrase II Bound With Substrate Carbon Dioxide
  41. 3d9t - CIAP1-BIR3 in Complex With N-Terminal Peptide From Caspase- 9 (Atpfqe)
  42. 3d9u - The BIR3 Domain of CIAP1 in Complex With the N Terminal Peptide From Smac/Diablo (Avpiaq).
  43. 3d9z - Use Of Carbonic Anhydrase II, IX Active-Site Mimic, For the Purpose of Screening Inhibitors For Possible Anti-Cancer Properties
  44. 3da2 - X-Ray Structure of Human Carbonic Anhydrase 13 in Complex With Inhibitor
  45. 3daz - Use Of Carbonic Anhydrase II, IX Active-Site Mimic, For the Purpose of Screening Inhibitors For Possible Anti-Cancer Properties
  46. 3dbh - Structural Dissection Of A Gating Mechanism Preventing Misactivation of Ubiquitin By NEDD8'S E1 (APPBP1- UBA3ARG190ALA-NEDD8ALA72ARG)
  47. 3dbk - Pseudomonas Aeruginosa Elastase With Phosphoramidon
  48. 3dbl - Structural Dissection Of A Gating Mechanism Preventing Misactivation of Ubiquitin By NEDD8'S E1 (APPBP1- UBA3ARG190WT-NEDD8ALA72GLN)
  49. 3dbr - Structural Dissection Of A Gating Mechanism Preventing Misactivation of Ubiquitin By NEDD8'S E1 (APPBP1- UBA3ARG190GLN-NEDD8ALA72ARG)
  50. 3dbu - Use Of Carbonic Anhydrase II, IX Active-Site Mimic, For the Purpose of Screening Inhibitors For Possible Anti-Cancer Properties


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Zinc coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
© Copyright 2008-2012 by atomistry.com