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Zinc in PDB 3u6o: Mutm Set 1 Apg

Enzymatic activity of Mutm Set 1 Apg

All present enzymatic activity of Mutm Set 1 Apg:
3.2.2.23;

Protein crystallography data

The structure of Mutm Set 1 Apg, PDB code: 3u6o was solved by R.J.Sung, M.Zhang, Y.Qi, G.L.Verdine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.69 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.188, 93.541, 104.650, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 19.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Mutm Set 1 Apg (pdb code 3u6o). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Mutm Set 1 Apg, PDB code: 3u6o:

Zinc binding site 1 out of 1 in 3u6o

Go back to Zinc Binding Sites List in 3u6o
Zinc binding site 1 out of 1 in the Mutm Set 1 Apg


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mutm Set 1 Apg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:19.3
occ:1.00
SG A:CYS269 2.3 16.4 1.0
SG A:CYS272 2.3 18.5 1.0
SG A:CYS252 2.4 17.5 1.0
SG A:CYS249 2.4 17.5 1.0
CB A:CYS249 3.1 16.4 1.0
CB A:CYS272 3.3 16.0 1.0
CB A:CYS269 3.3 14.1 1.0
CB A:CYS252 3.4 15.8 1.0
N A:CYS272 3.7 18.8 1.0
N A:CYS252 3.8 19.9 1.0
CA A:CYS272 4.1 17.4 1.0
CE1 A:PHE182 4.1 14.8 1.0
CA A:CYS252 4.1 14.3 1.0
CB A:ARG271 4.5 17.6 1.0
CB A:ARG251 4.5 18.5 0.5
CA A:CYS249 4.6 16.4 1.0
CB A:ARG251 4.6 18.0 0.5
CZ A:PHE182 4.7 18.6 1.0
CA A:CYS269 4.7 16.8 1.0
C A:ARG251 4.7 21.4 0.5
C A:ARG251 4.7 21.4 0.5
C A:ARG271 4.7 21.2 1.0
CB A:THR254 4.7 19.2 1.0
C A:CYS252 4.8 17.4 1.0
N A:GLY253 4.9 14.9 1.0
OG1 A:THR254 5.0 21.0 1.0
CA A:ARG271 5.0 17.2 1.0

Reference:

R.J.Sung, M.Zhang, Y.Qi, G.L.Verdine. Sequence-Dependent Structural Variation in Dna Undergoing Intrahelical Inspection By the Dna Glycosylase Mutm. J.Biol.Chem. V. 287 18044 2012.
ISSN: ISSN 0021-9258
PubMed: 22465958
DOI: 10.1074/JBC.M111.313635
Page generated: Sat Sep 26 14:00:31 2020
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