Atomistry » Zinc » PDB 3sbh-3siq » 3sci
Atomistry »
  Zinc »
    PDB 3sbh-3siq »
      3sci »

Zinc in PDB 3sci: Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Human Strain Complexed with Human Receptor ACE2

Enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Human Strain Complexed with Human Receptor ACE2

All present enzymatic activity of Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Human Strain Complexed with Human Receptor ACE2:
3.4.17.23;

Protein crystallography data

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Human Strain Complexed with Human Receptor ACE2, PDB code: 3sci was solved by K.Wu, G.Peng, M.Wilken, R.Geraghty, F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.24 / 2.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 81.362, 118.332, 111.937, 90.00, 93.06, 90.00
R / Rfree (%) 22.6 / 28.3

Other elements in 3sci:

The structure of Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Human Strain Complexed with Human Receptor ACE2 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Human Strain Complexed with Human Receptor ACE2 (pdb code 3sci). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Human Strain Complexed with Human Receptor ACE2, PDB code: 3sci:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3sci

Go back to Zinc Binding Sites List in 3sci
Zinc binding site 1 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Human Strain Complexed with Human Receptor ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Human Strain Complexed with Human Receptor ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn901

b:87.2
occ:1.00
NE2 A:HIS374 2.2 50.7 1.0
NE2 A:HIS378 2.2 42.8 1.0
OE1 A:GLU402 2.4 50.9 1.0
OE2 A:GLU402 2.6 52.3 1.0
CD A:GLU402 2.8 52.0 1.0
CD2 A:HIS374 3.0 50.5 1.0
CE1 A:HIS378 3.2 42.9 1.0
CD2 A:HIS378 3.2 43.1 1.0
CE1 A:HIS374 3.3 50.3 1.0
OE2 A:GLU375 3.7 52.4 1.0
OE1 A:GLU375 3.8 50.4 1.0
CD A:GLU375 4.1 49.7 1.0
CG A:HIS374 4.2 50.1 1.0
ND1 A:HIS374 4.3 50.3 1.0
ND1 A:HIS378 4.3 43.4 1.0
CG A:HIS378 4.3 43.4 1.0
CG A:GLU402 4.3 51.9 1.0

Zinc binding site 2 out of 2 in 3sci

Go back to Zinc Binding Sites List in 3sci
Zinc binding site 2 out of 2 in the Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Human Strain Complexed with Human Receptor ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Spike Protein Receptor-Binding Domain From A Predicted Sars Coronavirus Human Strain Complexed with Human Receptor ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn901

b:91.0
occ:1.00
OE1 B:GLU402 2.1 52.1 1.0
NE2 B:HIS374 2.3 52.9 1.0
NE2 B:HIS378 2.4 45.7 1.0
CD B:GLU402 2.8 52.6 1.0
OE2 B:GLU402 2.9 53.9 1.0
CD2 B:HIS374 2.9 51.7 1.0
CD2 B:HIS378 3.3 44.7 1.0
CE1 B:HIS378 3.4 46.4 1.0
CE1 B:HIS374 3.5 52.2 1.0
OE2 B:GLU375 3.6 47.2 1.0
OE1 B:GLU375 3.7 49.6 1.0
CD B:GLU375 4.0 47.3 1.0
CG B:HIS374 4.2 50.0 1.0
CG B:GLU402 4.3 52.0 1.0
CG B:HIS378 4.4 44.6 1.0
ND1 B:HIS374 4.4 51.4 1.0
ND1 B:HIS378 4.4 45.2 1.0

Reference:

K.Wu, G.Peng, M.Wilken, R.Geraghty, F.Li. Sars Coronavirus: Mechanism of Host Receptor Adaptation and Rational Prediction of Future Evolution To Be Published.
Page generated: Wed Dec 16 04:49:46 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy