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Zinc in PDB 3o70: Phd-Type Zinc Finger of Human Phd Finger Protein 13

Protein crystallography data

The structure of Phd-Type Zinc Finger of Human Phd Finger Protein 13, PDB code: 3o70 was solved by R.Lam, C.B.Bian, C.Xu, J.Kania, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.38 / 1.85
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 58.315, 58.315, 73.231, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 18.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Phd-Type Zinc Finger of Human Phd Finger Protein 13 (pdb code 3o70). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Phd-Type Zinc Finger of Human Phd Finger Protein 13, PDB code: 3o70:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3o70

Go back to Zinc Binding Sites List in 3o70
Zinc binding site 1 out of 2 in the Phd-Type Zinc Finger of Human Phd Finger Protein 13


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Phd-Type Zinc Finger of Human Phd Finger Protein 13 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn500

b:35.6
occ:1.00
ND1 A:HIS257 2.1 30.5 1.0
SG A:CYS237 2.3 36.7 1.0
SG A:CYS260 2.3 35.8 1.0
SG A:CYS235 2.3 34.5 1.0
CE1 A:HIS257 3.0 34.5 1.0
CG A:HIS257 3.1 30.6 1.0
CB A:CYS235 3.2 35.0 1.0
CB A:CYS237 3.2 43.9 1.0
CB A:CYS260 3.3 33.7 1.0
CB A:HIS257 3.4 29.4 1.0
O A:HOH11 3.8 41.1 1.0
N A:CYS237 4.1 46.0 1.0
N A:HIS257 4.1 29.9 1.0
NE2 A:HIS257 4.1 32.3 1.0
CD2 A:HIS257 4.2 29.6 1.0
CA A:CYS237 4.2 45.0 1.0
CA A:HIS257 4.4 29.2 1.0
CA A:CYS235 4.5 35.9 1.0
CA A:CYS260 4.7 34.8 1.0
O A:HOH21 4.7 48.3 1.0
C A:CYS235 4.8 41.3 1.0
NH1 A:ARG244 4.9 34.7 1.0
O A:HOH37 5.0 41.0 1.0

Zinc binding site 2 out of 2 in 3o70

Go back to Zinc Binding Sites List in 3o70
Zinc binding site 2 out of 2 in the Phd-Type Zinc Finger of Human Phd Finger Protein 13


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Phd-Type Zinc Finger of Human Phd Finger Protein 13 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:38.0
occ:1.00
SG A:CYS274 2.2 39.1 1.0
SG A:CYS252 2.3 38.1 1.0
SG A:CYS249 2.3 32.4 1.0
SG A:CYS277 2.4 39.3 1.0
CB A:CYS249 3.2 31.2 1.0
CB A:CYS277 3.2 41.5 1.0
CB A:CYS252 3.3 39.3 1.0
CB A:CYS274 3.4 38.0 1.0
N A:CYS252 3.7 37.3 1.0
N A:CYS274 3.9 35.3 1.0
CA A:CYS252 4.1 37.2 1.0
N A:CYS277 4.1 43.5 1.0
CA A:CYS274 4.2 37.0 1.0
CA A:CYS277 4.2 45.5 1.0
O A:HOH34 4.4 55.1 1.0
CA A:CYS249 4.6 29.0 1.0
O A:CYS274 4.6 40.4 1.0
C A:CYS274 4.8 44.4 1.0
C A:GLU251 4.8 38.3 1.0
CB A:GLU251 4.8 33.6 1.0
C A:CYS252 4.8 38.5 1.0
N A:GLU251 5.0 32.7 1.0

Reference:

H.R.Chung, C.Xu, A.Fuchs, A.Mund, M.Lange, H.Staege, T.Schubert, C.Bian, I.Dunkel, A.Eberharter, C.Regnard, H.Klinker, D.Meierhofer, L.Cozzuto, A.Winterpacht, L.Di Croce, J.Min, H.Will, S.Kinkley. PHF13 Is A Molecular Reader and Transcriptional Co-Regulator of H3K4ME2/3. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27223324
DOI: 10.7554/ELIFE.10607
Page generated: Wed Dec 16 04:39:51 2020

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