Atomistry » Zinc » PDB 3ljg-3lsw » 3ljt
Atomistry »
  Zinc »
    PDB 3ljg-3lsw »
      3ljt »

Zinc in PDB 3ljt: Crystal Structure of the Catalytic Domain of Adamts-5 in Complex with An Amino-2-Indanol Compound

Protein crystallography data

The structure of Crystal Structure of the Catalytic Domain of Adamts-5 in Complex with An Amino-2-Indanol Compound, PDB code: 3ljt was solved by H.-S.Shieh, J.M.Williams, N.Caspers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.12 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.398, 44.518, 76.251, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 19.8

Other elements in 3ljt:

The structure of Crystal Structure of the Catalytic Domain of Adamts-5 in Complex with An Amino-2-Indanol Compound also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Catalytic Domain of Adamts-5 in Complex with An Amino-2-Indanol Compound (pdb code 3ljt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Catalytic Domain of Adamts-5 in Complex with An Amino-2-Indanol Compound, PDB code: 3ljt:

Zinc binding site 1 out of 1 in 3ljt

Go back to Zinc Binding Sites List in 3ljt
Zinc binding site 1 out of 1 in the Crystal Structure of the Catalytic Domain of Adamts-5 in Complex with An Amino-2-Indanol Compound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Catalytic Domain of Adamts-5 in Complex with An Amino-2-Indanol Compound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn901

b:7.6
occ:1.00
NE2 A:HIS414 2.1 5.1 1.0
NE2 A:HIS420 2.1 7.7 1.0
NE2 A:HIS410 2.1 6.2 1.0
O23 A:LA3801 2.2 9.8 1.0
O21 A:LA3801 2.2 11.7 1.0
C20 A:LA3801 2.8 12.4 1.0
N22 A:LA3801 2.9 13.4 1.0
CE1 A:HIS414 3.0 5.3 1.0
CE1 A:HIS420 3.0 8.8 1.0
CD2 A:HIS410 3.0 4.1 1.0
CD2 A:HIS420 3.1 6.1 1.0
CD2 A:HIS414 3.1 5.6 1.0
CE1 A:HIS410 3.2 5.5 1.0
ND1 A:HIS414 4.1 6.4 1.0
ND1 A:HIS420 4.2 8.6 1.0
CG A:HIS420 4.2 6.4 1.0
CG A:HIS414 4.2 5.7 1.0
CG A:HIS410 4.2 6.1 1.0
ND1 A:HIS410 4.3 5.2 1.0
C19 A:LA3801 4.3 14.4 1.0
O A:HOH5040 4.3 14.7 1.0
OE2 A:GLU411 4.5 11.7 1.0
C8 A:LA3801 4.5 13.5 1.0
OE1 A:GLU411 4.6 7.0 1.0
C17 A:LA3801 4.6 13.7 1.0
O A:HOH5296 4.6 39.7 1.0
CE A:MET439 4.8 6.2 1.0
CD A:GLU411 4.9 8.7 1.0
O A:HOH5252 4.9 39.0 1.0

Reference:

H.S.Shieh, A.G.Tomasselli, K.J.Mathis, M.E.Schnute, S.S.Woodard, N.Caspers, J.M.Williams, J.R.Kiefer, G.Munie, A.Wittwer, A.M.Malfait, M.D.Tortorella. Structure Analysis Reveals the Flexibility of the Adamts-5 Active Site. Protein Sci. V. 20 735 2011.
ISSN: ISSN 0961-8368
PubMed: 21370305
DOI: 10.1002/PRO.606
Page generated: Wed Dec 16 04:32:26 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy