Atomistry » Zinc » PDB 2yqm-2yts » 3knj
Atomistry »
  Zinc »
    PDB 2yqm-2yts »
      3knj »

Zinc in the structure of The Structures of Viomycin Bound to The 70S Ribosome. This File Contains the 30S Subunit For Molecule II' (pdb 3knj)

The binding sites of Zinc atom in the structure of The Structures of Viomycin Bound to The 70S Ribosome. This File Contains the 30S Subunit For Molecule II' (pdb code 3knj). This binding sites where shown with 5.0 Angstroms radius around Zinc atom.
The 3knj structure was solved by R.E.STANLEY, G.BLAHA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)50.0-3.1
Space groupP212121
a (A)210.230
b (A)448.510
c (A)633.620
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)24.8
Rfree (%)27.2

Zinc Binding Sites:

Zinc binding site 1 out of 1 in 3knj


Zinc binding site 1 out of 1 in 3knj
Click to enlarge
stereopicture of Zinc binding site 1 out of 1 in 3knj
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Zinc in the PDB 3knj. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Cys9, D: Cys12, D: Leu19, D: Lys22, D: Cys26, D: Cys31, D: Ala32,

conact list:


AtomAtomDistance (A)
ZnCB D:Cys93.56
ZnSG D:Cys91.79
ZnCA D:Cys94.25
ZnCB D:Cys123.76
ZnSG D:Cys122.44
ZnO D:Leu194.21
ZnCB D:Lys224.55
ZnCE D:Lys223.68
ZnCD D:Lys222.50
ZnCG D:Lys223.30
ZnNZ D:Lys224.28
ZnO D:Cys264.67
ZnN D:Cys264.26
ZnCB D:Cys263.26
ZnSG D:Cys262.22
ZnC D:Cys264.58
ZnCA D:Cys263.41
ZnO D:Cys312.69
ZnN D:Cys314.77
ZnCB D:Cys313.27
ZnSG D:Cys312.25
ZnC D:Cys313.37
ZnCA D:Cys313.30
ZnN D:Ala324.69

interactive model:




© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy