Zinc in PDB 3dgm: 2.4 A Structure of A Non-Biological Atp Binding Protein with Adp Bound

The structure of 2.4 A Structure of A Non-Biological Atp Binding Protein with Adp Bound, PDB code: 3dgm was solved by C.R.Simmons, J.P.Allen, J.C.Chaput, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.44 / 2.40
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	73.220, 73.220, 54.786, 90.00, 90.00, 120.00
R / Rfree (%)	17.1 / 19.9

The binding sites of Zinc atom in the 2.4 A Structure of A Non-Biological Atp Binding Protein with Adp Bound (pdb code 3dgm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the 2.4 A Structure of A Non-Biological Atp Binding Protein with Adp Bound, PDB code: 3dgm:

Zinc binding site 1 out of 1 in the 2.4 A Structure of A Non-Biological Atp Binding Protein with Adp Bound


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 2.4 A Structure of A Non-Biological Atp Binding Protein with Adp Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn80 b:19.6 occ:1.00 SG A:CYS49 2.3 18.8 1.0 SG A:CYS23 2.4 17.1 1.0 SG A:CYS46 2.4 14.6 1.0 SG A:CYS26 2.4 22.3 1.0 CB A:CYS23 3.1 19.0 1.0 CB A:CYS49 3.1 16.1 1.0 CB A:CYS26 3.3 22.4 1.0 N A:CYS26 3.6 22.9 1.0 CB A:CYS46 3.6 12.9 1.0 N A:CYS46 3.9 13.7 1.0 CA A:CYS26 4.0 23.1 1.0 CA A:CYS49 4.2 16.6 1.0 N A:CYS49 4.3 16.5 1.0 CA A:CYS46 4.3 14.2 1.0 CB A:ALA29 4.4 21.6 1.0 O A:HOH164 4.5 34.3 1.0 CA A:CYS23 4.5 19.9 1.0 CB A:LYS25 4.7 22.1 1.0 C A:LYS25 4.7 23.0 1.0 C A:CYS26 4.9 24.0 1.0 C A:CYS46 4.9 14.6 1.0 O A:CYS46 4.9 14.5 1.0 N A:LYS27 5.0 24.7 1.0

C.R.Simmons, D.A.Smith, J.L.Watkins, J.M.Stomel, J.P.Allen, J.C.Chaput. A Primordial Atp Binding Protein Generated From Random Sequence Origin To Be Published.