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Zinc in PDB 2yqm: Solution Structure of the Fyve Domain in Zinc Finger Fyve Domain-Containing Protein 12

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Fyve Domain in Zinc Finger Fyve Domain-Containing Protein 12 (pdb code 2yqm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Fyve Domain in Zinc Finger Fyve Domain-Containing Protein 12, PDB code: 2yqm:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2yqm

Go back to Zinc Binding Sites List in 2yqm
Zinc binding site 1 out of 2 in the Solution Structure of the Fyve Domain in Zinc Finger Fyve Domain-Containing Protein 12


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Fyve Domain in Zinc Finger Fyve Domain-Containing Protein 12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
SG A:CYS53 2.2 0.0 1.0
SG A:CYS56 2.3 0.0 1.0
SG A:CYS29 2.4 0.0 1.0
SG A:CYS32 2.4 0.0 1.0
HB3 A:CYS32 3.0 0.0 1.0
H A:CYS53 3.0 0.0 1.0
HB2 A:CYS56 3.0 0.0 1.0
H A:CYS32 3.0 0.0 1.0
HB2 A:CYS29 3.2 0.0 1.0
CB A:CYS29 3.3 0.0 1.0
CB A:CYS32 3.3 0.0 1.0
CB A:CYS56 3.3 0.0 1.0
HB3 A:CYS29 3.4 0.0 1.0
HB3 A:CYS53 3.4 0.0 1.0
CB A:CYS53 3.5 0.0 1.0
H A:CYS56 3.7 0.0 1.0
HB A:THR55 3.7 0.0 1.0
HB3 A:GLN31 3.8 0.0 1.0
N A:CYS53 3.8 0.0 1.0
N A:CYS32 3.9 0.0 1.0
HB3 A:CYS56 4.0 0.0 1.0
N A:CYS56 4.1 0.0 1.0
HB2 A:CYS32 4.1 0.0 1.0
HD1 A:PHE52 4.2 0.0 1.0
CA A:CYS32 4.2 0.0 1.0
CA A:CYS53 4.2 0.0 1.0
HE A:ARG40 4.3 0.0 1.0
CA A:CYS56 4.3 0.0 1.0
HB2 A:CYS53 4.3 0.0 1.0
H A:GLU33 4.3 0.0 1.0
HB3 A:PHE52 4.5 0.0 1.0
HB2 A:LYS34 4.5 0.0 1.0
H A:GLN31 4.5 0.0 1.0
HA A:PHE52 4.6 0.0 1.0
CA A:CYS29 4.7 0.0 1.0
C A:CYS53 4.7 0.0 1.0
CB A:THR55 4.7 0.0 1.0
H A:LYS34 4.7 0.0 1.0
O A:CYS53 4.7 0.0 1.0
HH21 A:ARG40 4.8 0.0 1.0
C A:THR55 4.8 0.0 1.0
CB A:GLN31 4.8 0.0 1.0
H A:THR55 4.8 0.0 1.0
HA A:CYS56 4.9 0.0 1.0
N A:GLU33 4.9 0.0 1.0
C A:PHE52 4.9 0.0 1.0
HA A:CYS29 5.0 0.0 1.0
C A:CYS32 5.0 0.0 1.0
HG3 A:LYS34 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2yqm

Go back to Zinc Binding Sites List in 2yqm
Zinc binding site 2 out of 2 in the Solution Structure of the Fyve Domain in Zinc Finger Fyve Domain-Containing Protein 12


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Fyve Domain in Zinc Finger Fyve Domain-Containing Protein 12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS73 2.2 0.0 1.0
SG A:CYS76 2.3 0.0 1.0
SG A:CYS48 2.4 0.0 1.0
SG A:CYS45 2.4 0.0 1.0
H A:CYS48 3.0 0.0 1.0
H A:CYS73 3.0 0.0 1.0
HB2 A:CYS76 3.0 0.0 1.0
HB3 A:CYS48 3.2 0.0 1.0
CB A:CYS76 3.3 0.0 1.0
HB2 A:CYS45 3.3 0.0 1.0
CB A:CYS45 3.3 0.0 1.0
CB A:CYS48 3.4 0.0 1.0
HB3 A:CYS73 3.4 0.0 1.0
HB3 A:CYS45 3.5 0.0 1.0
CB A:CYS73 3.5 0.0 1.0
HB3 A:ASN47 3.6 0.0 1.0
HE2 A:PHE52 3.8 0.0 1.0
H A:CYS76 3.8 0.0 1.0
N A:CYS73 3.8 0.0 1.0
N A:CYS48 3.8 0.0 1.0
HB3 A:SER75 4.0 0.0 1.0
HB3 A:CYS76 4.1 0.0 1.0
HB A:VAL72 4.1 0.0 1.0
N A:CYS76 4.2 0.0 1.0
CA A:CYS73 4.2 0.0 1.0
H A:GLY49 4.2 0.0 1.0
CA A:CYS48 4.2 0.0 1.0
HB2 A:CYS48 4.2 0.0 1.0
HB2 A:CYS73 4.3 0.0 1.0
CA A:CYS76 4.3 0.0 1.0
H A:ASN47 4.4 0.0 1.0
CE2 A:PHE52 4.5 0.0 1.0
O A:CYS73 4.5 0.0 1.0
CB A:ASN47 4.7 0.0 1.0
C A:CYS73 4.7 0.0 1.0
HA A:CYS76 4.8 0.0 1.0
HA A:VAL72 4.8 0.0 1.0
H A:HIS50 4.8 0.0 1.0
CA A:CYS45 4.8 0.0 1.0
HB2 A:HIS50 4.8 0.0 1.0
HD21 A:ASN47 4.8 0.0 1.0
N A:GLY49 4.8 0.0 1.0
HG12 A:VAL72 4.9 0.0 1.0
HD2 A:PHE52 4.9 0.0 1.0
CB A:SER75 4.9 0.0 1.0
H A:SER75 5.0 0.0 1.0
C A:VAL72 5.0 0.0 1.0
C A:SER75 5.0 0.0 1.0
C A:CYS48 5.0 0.0 1.0
C A:ASN47 5.0 0.0 1.0

Reference:

F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama. Solution Structure of the Fyve Domain in Zinc Finger Fyve Domain-Containing Protein 12 To Be Published.
Page generated: Wed Dec 16 04:02:36 2020

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