Atomistry » Zinc » PDB 2iux-2ja7 » 2wrk
Atomistry »
  Zinc »
    PDB 2iux-2ja7 »
      2wrk »

Zinc in the structure of The Structure Of The Ribosome With Elongation Factor G Trapped in the Post-Translocational State (Part 3 of 4). (pdb 2wrk)

The binding sites of Zinc atom in the structure of The Structure Of The Ribosome With Elongation Factor G Trapped in the Post-Translocational State (Part 3 of 4). (pdb code 2wrk). This binding sites where shown with 5.0 Angstroms radius around Zinc atom.
The 2wrk structure was solved by Y.-G.GAO, M.SELMER, C.M.DUNHAM, A.WEIXLBAUMER, A.C.KELLEY, V.RAMAKRISHNAN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)50.0-3.6
Space groupP1211
a (A)291.839
b (A)270.358
c (A)402.363
alpha (°)90.00
beta (°)91.73
gamma (°)90.00
Rfactor (%)22.7
Rfree (%)26

Zinc Binding Sites:

Zinc binding site 1 out of 4 in 2wrk


Zinc binding site 1 out of 4 in 2wrk
Click to enlarge
stereopicture of Zinc binding site 1 out of 4 in 2wrk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Zinc in the PDB 2wrk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres:

conact list:


AtomAtomDistance (A)

interactive model:


Zinc binding site 2 out of 4 in 2wrk


Zinc binding site 2 out of 4 in 2wrk
Click to enlarge
stereopicture of Zinc binding site 2 out of 4 in 2wrk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Zinc in the PDB 2wrk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres:

conact list:


AtomAtomDistance (A)

interactive model:


Zinc binding site 3 out of 4 in 2wrk


Zinc binding site 3 out of 4 in 2wrk
Click to enlarge
stereopicture of Zinc binding site 3 out of 4 in 2wrk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Zinc in the PDB 2wrk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: N: Cys24, N: Arg26, N: Cys27, N: Arg29, N: Leu39, N: Cys40, N: Cys43,

conact list:


AtomAtomDistance (A)
ZnCB N:Cys243.35
ZnSG N:Cys242.56
ZnCA N:Cys244.83
ZnN N:Arg264.59
ZnCB N:Arg264.27
ZnC N:Arg264.42
ZnCA N:Arg264.65
ZnO N:Cys273.86
ZnN N:Cys273.33
ZnCB N:Cys273.30
ZnSG N:Cys271.92
ZnC N:Cys274.16
ZnCA N:Cys273.79
ZnN N:Arg294.97
ZnCB N:Arg294.00
ZnCG N:Arg294.81
ZnCD2 N:Leu394.88
ZnC N:Leu394.96
ZnO N:Cys404.81
ZnN N:Cys403.79
ZnCB N:Cys403.14
ZnSG N:Cys402.12
ZnC N:Cys404.80
ZnCA N:Cys404.07
ZnN N:Cys434.30
ZnCB N:Cys433.44
ZnSG N:Cys432.58
ZnCA N:Cys434.51

interactive model:


Zinc binding site 4 out of 4 in 2wrk


Zinc binding site 4 out of 4 in 2wrk
Click to enlarge
stereopicture of Zinc binding site 4 out of 4 in 2wrk
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Zinc in the PDB 2wrk. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Cys9, D: Cys12, D: Leu19, D: Lys22, D: Cys26, D: Cys31, D: Ala32,

conact list:


AtomAtomDistance (A)
ZnCB D:Cys93.67
ZnSG D:Cys92.06
ZnCA D:Cys94.11
ZnCB D:Cys123.54
ZnSG D:Cys122.15
ZnCA D:Cys124.95
ZnO D:Leu193.37
ZnC D:Leu194.60
ZnCD D:Lys224.42
ZnCG D:Lys224.38
ZnN D:Cys264.95
ZnCB D:Cys263.56
ZnSG D:Cys262.15
ZnCA D:Cys264.05
ZnO D:Cys312.23
ZnN D:Cys314.75
ZnCB D:Cys313.34
ZnSG D:Cys312.19
ZnC D:Cys313.04
ZnCA D:Cys313.28
ZnN D:Ala324.30
ZnCB D:Ala324.48

interactive model:




© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy