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Zinc in PDB 2rgm: Rice BGLU1 Beta-Glucosidase, A Plant Exoglucanase/Beta-Glucosidase

Enzymatic activity of Rice BGLU1 Beta-Glucosidase, A Plant Exoglucanase/Beta-Glucosidase

All present enzymatic activity of Rice BGLU1 Beta-Glucosidase, A Plant Exoglucanase/Beta-Glucosidase:
3.2.1.21;

Protein crystallography data

The structure of Rice BGLU1 Beta-Glucosidase, A Plant Exoglucanase/Beta-Glucosidase, PDB code: 2rgm was solved by W.Chuenchor, J.R.Ketudat Cairns, S.Pengthaisong, R.C.Robinson, J.Yuvaniyama, C.-J.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.21 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.287, 101.286, 127.253, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 19.7

Other elements in 2rgm:

The structure of Rice BGLU1 Beta-Glucosidase, A Plant Exoglucanase/Beta-Glucosidase also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Rice BGLU1 Beta-Glucosidase, A Plant Exoglucanase/Beta-Glucosidase (pdb code 2rgm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Rice BGLU1 Beta-Glucosidase, A Plant Exoglucanase/Beta-Glucosidase, PDB code: 2rgm:

Zinc binding site 1 out of 1 in 2rgm

Go back to Zinc Binding Sites List in 2rgm
Zinc binding site 1 out of 1 in the Rice BGLU1 Beta-Glucosidase, A Plant Exoglucanase/Beta-Glucosidase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Rice BGLU1 Beta-Glucosidase, A Plant Exoglucanase/Beta-Glucosidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:7.1
occ:1.00
 OD2 A:ASP65 2.0 7.4 1.0
OD2 B:ASP65 2.0 8.2 1.0
ND1 A:HIS68 2.0 7.3 1.0
ND1 B:HIS68 2.1 7.5 1.0
CG A:ASP65 2.7 7.1 1.0
CG B:ASP65 2.7 8.7 1.0
OD1 B:ASP65 2.8 8.9 1.0
OD1 A:ASP65 2.8 8.6 1.0
CG A:HIS68 3.0 5.9 1.0
CG B:HIS68 3.0 6.6 1.0
CE1 A:HIS68 3.0 8.5 1.0
CE1 B:HIS68 3.1 7.5 1.0
CB A:HIS68 3.3 8.2 1.0
CB B:HIS68 3.3 7.7 1.0
O A:HOH1492 4.1 16.3 1.0
NE2 A:HIS68 4.1 7.5 1.0
CD2 A:HIS68 4.2 7.4 1.0
NE2 B:HIS68 4.2 7.5 1.0
CB A:ASP65 4.2 5.5 1.0
CD2 B:HIS68 4.2 7.1 1.0
O B:HOH1947 4.2 14.4 1.0
CB B:ASP65 4.2 5.7 1.0
CA A:HIS68 4.7 7.8 1.0
O A:HOH1415 4.7 9.4 1.0
CA B:HIS68 4.7 7.3 1.0
O B:HOH1931 4.7 10.7 1.0
N B:HIS68 5.0 6.7 1.0
N A:HIS68 5.0 6.9 1.0

Reference:

W.Chuenchor, S.Pengthaisong, R.C.Robinson, J.Yuvaniyama, W.Oonanant, D.R.Bevan, A.Esen, C.J.Chen, R.Opassiri, J.Svasti, J.R.K.Cairns. Structural Insights Into Rice BGLU1 Beta-Glucosidase Oligosaccharide Hydrolysis and Transglycosylation J.Mol.Biol. V. 377 1200 2008.
ISSN: ISSN 0022-2836
PubMed: 18308333
DOI: 10.1016/J.JMB.2008.01.076
Page generated: Thu Oct 17 03:48:05 2024

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