Zinc in PDB 2ee8: Solution Structure of Three Zf-C2H2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2

The binding sites of Zinc atom in the Solution Structure of Three Zf-C2H2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 (pdb code 2ee8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Solution Structure of Three Zf-C2H2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2, PDB code: 2ee8:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Solution Structure of Three Zf-C2H2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Three Zf-C2H2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:0.0 occ:1.00 NE2 A:HIS40 1.9 0.0 1.0 NE2 A:HIS36 2.0 0.0 1.0 SG A:CYS23 2.2 0.0 1.0 SG A:CYS20 2.4 0.0 1.0 CD2 A:HIS40 2.6 0.0 1.0 HD2 A:HIS40 2.6 0.0 1.0 CD2 A:HIS36 2.8 0.0 1.0 H A:CYS23 2.9 0.0 1.0 HD2 A:HIS36 2.9 0.0 1.0 CE1 A:HIS40 3.1 0.0 1.0 CE1 A:HIS36 3.2 0.0 1.0 HB3 A:CYS20 3.3 0.0 1.0 CB A:CYS20 3.3 0.0 1.0 HB2 A:PHE22 3.3 0.0 1.0 HB2 A:CYS20 3.4 0.0 1.0 CB A:CYS23 3.5 0.0 1.0 HB3 A:CYS23 3.5 0.0 1.0 HE1 A:HIS36 3.6 0.0 1.0 HE1 A:HIS40 3.6 0.0 1.0 N A:CYS23 3.7 0.0 1.0 H A:GLY24 3.8 0.0 1.0 CG A:HIS40 3.9 0.0 1.0 CG A:HIS36 4.0 0.0 1.0 ND1 A:HIS40 4.1 0.0 1.0 HD1 A:PHE22 4.1 0.0 1.0 ND1 A:HIS36 4.1 0.0 1.0 CA A:CYS23 4.2 0.0 1.0 HB3 A:ARG25 4.2 0.0 1.0 H A:PHE22 4.2 0.0 1.0 H A:ARG25 4.3 0.0 1.0 HB2 A:CYS23 4.3 0.0 1.0 CB A:PHE22 4.4 0.0 1.0 HZ A:PHE27 4.4 0.0 1.0 H A:LYS21 4.5 0.0 1.0 N A:GLY24 4.5 0.0 1.0 HE1 A:PHE27 4.7 0.0 1.0 HA A:GLU37 4.7 0.0 1.0 C A:PHE22 4.7 0.0 1.0 CA A:CYS20 4.7 0.0 1.0 N A:PHE22 4.8 0.0 1.0 C A:CYS23 4.8 0.0 1.0 HB2 A:ARG25 4.9 0.0 1.0 CA A:PHE22 4.9 0.0 1.0 HB3 A:PHE22 4.9 0.0 1.0 CD1 A:PHE22 5.0 0.0 1.0 HD1 A:HIS40 5.0 0.0 1.0

Zinc binding site 2 out of 3 in the Solution Structure of Three Zf-C2H2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Three Zf-C2H2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:0.0 occ:1.00 NE2 A:HIS64 1.9 0.0 1.0 NE2 A:HIS68 2.1 0.0 1.0 SG A:CYS51 2.2 0.0 1.0 SG A:CYS48 2.4 0.0 1.0 CE1 A:HIS64 2.9 0.0 1.0 CD2 A:HIS64 2.9 0.0 1.0 CD2 A:HIS68 3.0 0.0 1.0 CE1 A:HIS68 3.1 0.0 1.0 HD2 A:HIS64 3.2 0.0 1.0 HD2 A:HIS68 3.2 0.0 1.0 HE1 A:HIS64 3.2 0.0 1.0 HB3 A:CYS51 3.2 0.0 1.0 HB2 A:CYS48 3.3 0.0 1.0 CB A:CYS48 3.3 0.0 1.0 CB A:CYS51 3.4 0.0 1.0 HE1 A:HIS68 3.4 0.0 1.0 HB3 A:CYS48 3.5 0.0 1.0 HZ A:PHE55 3.5 0.0 1.0 H A:CYS51 3.6 0.0 1.0 HD11 A:ILE67 3.7 0.0 1.0 HA A:ARG65 3.8 0.0 1.0 HD13 A:ILE67 3.8 0.0 1.0 ND1 A:HIS64 4.0 0.0 1.0 CG A:HIS64 4.0 0.0 1.0 HB2 A:CYS51 4.1 0.0 1.0 CG A:HIS68 4.1 0.0 1.0 ND1 A:HIS68 4.2 0.0 1.0 N A:CYS51 4.2 0.0 1.0 CD1 A:ILE67 4.2 0.0 1.0 HB2 A:LYS53 4.3 0.0 1.0 HG12 A:ILE67 4.3 0.0 1.0 HD2 A:LYS53 4.3 0.0 1.0 H A:LYS53 4.4 0.0 1.0 CA A:CYS51 4.4 0.0 1.0 H A:ILE50 4.4 0.0 1.0 CZ A:PHE55 4.5 0.0 1.0 H A:HIS52 4.6 0.0 1.0 HG3 A:ARG65 4.6 0.0 1.0 H A:ASP49 4.6 0.0 1.0 HG2 A:ARG65 4.7 0.0 1.0 HB A:ILE50 4.7 0.0 1.0 CG1 A:ILE67 4.7 0.0 1.0 CA A:CYS48 4.8 0.0 1.0 CA A:ARG65 4.8 0.0 1.0 HG13 A:ILE67 4.8 0.0 1.0 HE1 A:PHE55 4.9 0.0 1.0 HD1 A:HIS64 4.9 0.0 1.0 C A:CYS51 4.9 0.0 1.0 N A:HIS52 4.9 0.0 1.0 HA A:CYS48 5.0 0.0 1.0

Zinc binding site 3 out of 3 in the Solution Structure of Three Zf-C2H2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of Three Zf-C2H2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:0.0 occ:1.00 NE2 A:HIS92 2.0 0.0 1.0 NE2 A:HIS96 2.0 0.0 1.0 SG A:CYS76 2.4 0.0 1.0 SG A:CYS79 2.4 0.0 1.0 H A:CYS79 2.5 0.0 1.0 CD2 A:HIS96 2.6 0.0 1.0 HD2 A:HIS96 2.6 0.0 1.0 CE1 A:HIS92 2.7 0.0 1.0 HE1 A:HIS92 2.9 0.0 1.0 HB2 A:GLU78 3.1 0.0 1.0 CD2 A:HIS92 3.1 0.0 1.0 CE1 A:HIS96 3.2 0.0 1.0 HB3 A:CYS76 3.2 0.0 1.0 CB A:CYS76 3.3 0.0 1.0 H A:GLY80 3.3 0.0 1.0 HB3 A:CYS79 3.3 0.0 1.0 HB2 A:CYS76 3.4 0.0 1.0 CB A:CYS79 3.4 0.0 1.0 N A:CYS79 3.4 0.0 1.0 HD2 A:HIS92 3.5 0.0 1.0 HE1 A:HIS96 3.6 0.0 1.0 CG A:HIS96 3.8 0.0 1.0 H A:LYS81 3.9 0.0 1.0 ND1 A:HIS92 3.9 0.0 1.0 CA A:CYS79 4.0 0.0 1.0 HE2 A:PHE83 4.0 0.0 1.0 CB A:GLU78 4.0 0.0 1.0 ND1 A:HIS96 4.1 0.0 1.0 HB2 A:LYS81 4.1 0.0 1.0 CG A:HIS92 4.1 0.0 1.0 N A:GLY80 4.1 0.0 1.0 HB3 A:GLU78 4.1 0.0 1.0 HB2 A:CYS79 4.3 0.0 1.0 H A:GLU78 4.3 0.0 1.0 HG2 A:LYS81 4.4 0.0 1.0 HG3 A:LYS81 4.4 0.0 1.0 OE1 A:GLU78 4.5 0.0 1.0 C A:GLU78 4.5 0.0 1.0 C A:CYS79 4.6 0.0 1.0 HD22 A:LEU95 4.6 0.0 1.0 HD21 A:LEU95 4.7 0.0 1.0 CA A:GLU78 4.7 0.0 1.0 N A:GLU78 4.7 0.0 1.0 CA A:CYS76 4.7 0.0 1.0 N A:LYS81 4.8 0.0 1.0 CG A:LYS81 4.8 0.0 1.0 HD1 A:HIS92 4.8 0.0 1.0 HD11 A:LEU95 4.8 0.0 1.0 HA A:CYS79 4.9 0.0 1.0 HA A:LYS93 4.9 0.0 1.0 CB A:LYS81 4.9 0.0 1.0

T.Tomizawa, S.Koshiba, S.Watanabe, T.Harada, T.Kigawa, S.Yokoyama. Solution Structure of Three Zf-C2H2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 To Be Published.