Atomistry » Zinc » PDB 2b65-2bmi » 2b65
Atomistry »
  Zinc »
    PDB 2b65-2bmi »
      2b65 »

Zinc in PDB 2b65: Crystal Structure of the Complex of C-Lobe of Bovine Lactoferrin with Maltose at 1.5A Resolution

Protein crystallography data

The structure of Crystal Structure of the Complex of C-Lobe of Bovine Lactoferrin with Maltose at 1.5A Resolution, PDB code: 2b65 was solved by N.Singh, R.Prem Kumar, T.Jabeen, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.484, 49.846, 65.161, 90.00, 107.07, 90.00
R / Rfree (%) 19.3 / 21.9

Other elements in 2b65:

The structure of Crystal Structure of the Complex of C-Lobe of Bovine Lactoferrin with Maltose at 1.5A Resolution also contains other interesting chemical elements:

Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Complex of C-Lobe of Bovine Lactoferrin with Maltose at 1.5A Resolution (pdb code 2b65). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of the Complex of C-Lobe of Bovine Lactoferrin with Maltose at 1.5A Resolution, PDB code: 2b65:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2b65

Go back to Zinc Binding Sites List in 2b65
Zinc binding site 1 out of 3 in the Crystal Structure of the Complex of C-Lobe of Bovine Lactoferrin with Maltose at 1.5A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Complex of C-Lobe of Bovine Lactoferrin with Maltose at 1.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:17.7
occ:1.00
OE2 A:GLU659 2.0 16.9 1.0
O A:HOH3193 2.2 24.2 1.0
OE1 A:GLU659 2.2 15.2 1.0
CD A:GLU659 2.4 17.4 1.0
O A:GLY653 3.7 23.8 1.0
CG A:GLU659 3.9 16.2 1.0
O A:HOH3282 3.9 27.9 1.0
O A:HOH3411 4.1 35.8 1.0
O A:ARG654 4.4 17.5 1.0
CA A:PRO655 4.6 16.6 1.0
CB A:GLU659 4.8 16.0 1.0
N A:THR656 4.8 14.6 1.0
CG2 A:THR656 4.9 14.7 1.0
C A:GLY653 4.9 22.3 1.0

Zinc binding site 2 out of 3 in 2b65

Go back to Zinc Binding Sites List in 2b65
Zinc binding site 2 out of 3 in the Crystal Structure of the Complex of C-Lobe of Bovine Lactoferrin with Maltose at 1.5A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Complex of C-Lobe of Bovine Lactoferrin with Maltose at 1.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1002

b:21.3
occ:1.00
O A:HOH3374 1.9 37.9 1.0
O A:HOH3375 2.0 33.1 1.0
NE2 A:HIS588 2.1 18.0 1.0
O A:HOH3195 2.2 23.3 1.0
CE1 A:HIS588 2.9 19.3 1.0
CD2 A:HIS588 3.2 19.7 1.0
ND1 A:HIS588 4.1 18.7 1.0
O A:HOH3376 4.2 29.9 1.0
O A:HOH3129 4.2 33.6 1.0
CG2 A:VAL591 4.2 23.0 1.0
CG A:HIS588 4.2 19.2 1.0
O A:HOH3304 4.2 37.6 1.0
O A:HOH3091 4.5 25.0 1.0
O A:HOH3048 4.6 21.6 1.0

Zinc binding site 3 out of 3 in 2b65

Go back to Zinc Binding Sites List in 2b65
Zinc binding site 3 out of 3 in the Crystal Structure of the Complex of C-Lobe of Bovine Lactoferrin with Maltose at 1.5A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Complex of C-Lobe of Bovine Lactoferrin with Maltose at 1.5A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1003

b:23.7
occ:0.50
NE2 A:HIS606 2.0 30.6 1.0
N A:THR343 2.0 36.0 1.0
O A:THR343 2.1 28.6 1.0
O3 A:SO42002 2.3 34.1 0.5
CE1 A:HIS606 2.3 29.9 1.0
C A:THR343 2.8 29.2 1.0
CA A:THR343 2.8 32.2 1.0
CB A:TYR342 2.9 42.8 1.0
C A:TYR342 2.9 39.1 1.0
CD1 A:TYR342 3.1 41.5 1.0
CA A:TYR342 3.2 41.3 1.0
OG1 A:THR343 3.3 32.1 1.0
CD2 A:HIS606 3.3 25.2 1.0
CG A:TYR342 3.4 43.8 1.0
ND1 A:HIS606 3.6 30.9 1.0
S A:SO42002 3.6 37.0 0.5
CB A:THR343 3.7 32.1 1.0
O A:HOH3388 3.7 37.9 1.0
O A:TYR342 3.9 40.1 1.0
O A:HOH3368 4.0 33.3 1.0
O2 A:SO42002 4.0 44.4 0.5
CG A:HIS606 4.1 25.6 1.0
N A:ARG344 4.1 26.6 1.0
O1 A:SO42002 4.3 41.0 0.5
CE1 A:TYR342 4.4 42.3 1.0
CG2 A:THR343 4.6 37.1 1.0
O4 A:SO42002 4.6 41.4 0.5
N A:TYR342 4.7 42.5 1.0
CD2 A:TYR342 4.8 44.8 1.0
CA A:ARG344 4.9 25.6 1.0
CG2 A:VAL610 4.9 20.9 1.0
O A:HOH3389 5.0 38.6 1.0

Reference:

N.Singh, R.Prem Kumar, T.Jabeen, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of the Complex of C-Lobe of Bovine Lactoferrin with Maltose at 1.5A Resolution To Be Published.
Page generated: Wed Dec 16 03:18:17 2020

Last articles

Zn in 7RRP
Zn in 7OKY
Zn in 7OL0
Zn in 7OKX
Zn in 7ONB
Zn in 7RSF
Zn in 7OUF
Zn in 7OUG
Zn in 7OUH
Zn in 7RGN
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy