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Zinc in the structure of Crystal Structure Of The E. Coli Ribosome Bound to Cem-101. This File Contains The 50S Subunit of the Second 70S Ribosome. (pdb 1vt2)

The binding sites of Zinc atom in the structure of Crystal Structure Of The E. Coli Ribosome Bound to Cem-101. This File Contains The 50S Subunit of the Second 70S Ribosome. (pdb code 1vt2). This binding sites where shown with 5.0 Angstroms radius around Zinc atom.
The 1vt2 structure was solved by J.A.DUNKLE, W.ZHANG, J.H.D.CATE, A.S.MANKIN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)69.8-3.3
Space groupP212121
a (A)210.759
b (A)433.272
c (A)618.863
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)18.7
Rfree (%)24.4

Zinc Binding Sites:

Zinc binding site 1 out of 1 in 1vt2


Zinc binding site 1 out of 1 in 1vt2
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stereopicture of Zinc binding site 1 out of 1 in 1vt2
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Zinc in the PDB 1vt2. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: 4: Leu10, 4: Cys11, 4: Asn13, 4: Cys14, 4: Cys27, 4: Ala29, 4: His33,

conact list:


AtomAtomDistance (A)
ZnCB 4:Leu104.94
ZnC 4:Leu104.88
ZnO 4:Cys114.32
ZnN 4:Cys114.07
ZnCB 4:Cys114.00
ZnSG 4:Cys112.84
ZnC 4:Cys114.63
ZnCA 4:Cys114.44
ZnO 4:Asn134.47
ZnN 4:Asn134.84
ZnCB 4:Asn134.83
ZnC 4:Asn134.31
ZnCA 4:Asn134.86
ZnN 4:Cys144.29
ZnCB 4:Cys144.24
ZnSG 4:Cys142.70
ZnCA 4:Cys144.50
ZnCB 4:Cys273.87
ZnSG 4:Cys272.91
ZnCA 4:Cys274.88
ZnCB 4:Ala294.83
ZnNE2 4:His334.45
ZnCB 4:His333.47
ZnND1 4:His332.35
ZnCD2 4:His334.47
ZnCE1 4:His333.41
ZnCG 4:His333.28
ZnCA 4:His335.00

interactive model:




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