Zinc in PDB 1tbo: uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures
Zinc Binding Sites:
The binding sites of Zinc atom in the uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures
(pdb code 1tbo). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures, PDB code: 1tbo:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 1tbo
Go back to
Zinc Binding Sites List in 1tbo
Zinc binding site 1 out
of 2 in the uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn1
b:0.5
occ:1.00
|
ND1
|
A:HIS102
|
1.8
|
0.0
|
1.0
|
SG
|
A:CYS135
|
2.1
|
0.0
|
1.0
|
SG
|
A:CYS132
|
2.5
|
0.0
|
1.0
|
SG
|
A:CYS151
|
2.7
|
0.0
|
1.0
|
CE1
|
A:HIS102
|
2.8
|
0.0
|
1.0
|
HB3
|
A:HIS102
|
2.8
|
0.0
|
1.0
|
CG
|
A:HIS102
|
2.8
|
0.0
|
1.0
|
HE1
|
A:HIS102
|
3.0
|
0.0
|
1.0
|
CB
|
A:CYS132
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS132
|
3.2
|
0.0
|
1.0
|
HB3
|
A:CYS132
|
3.2
|
0.0
|
1.0
|
CB
|
A:HIS102
|
3.3
|
0.0
|
1.0
|
HA
|
A:CYS151
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS135
|
3.3
|
0.0
|
1.0
|
H
|
A:CYS135
|
3.4
|
0.0
|
1.0
|
HB2
|
A:MET137
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS135
|
3.4
|
0.0
|
1.0
|
HA
|
A:HIS102
|
3.4
|
0.0
|
1.0
|
HB2
|
A:CYS151
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS151
|
3.6
|
0.0
|
1.0
|
HB3
|
A:CYS134
|
3.7
|
0.0
|
1.0
|
NE2
|
A:HIS102
|
3.9
|
0.0
|
1.0
|
CA
|
A:HIS102
|
3.9
|
0.0
|
1.0
|
N
|
A:CYS135
|
3.9
|
0.0
|
1.0
|
CD2
|
A:HIS102
|
3.9
|
0.0
|
1.0
|
CA
|
A:CYS151
|
4.0
|
0.0
|
1.0
|
HB3
|
A:MET137
|
4.0
|
0.0
|
1.0
|
H
|
A:LYS103
|
4.1
|
0.0
|
1.0
|
HB2
|
A:CYS135
|
4.2
|
0.0
|
1.0
|
CB
|
A:MET137
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS135
|
4.2
|
0.0
|
1.0
|
HB2
|
A:HIS102
|
4.2
|
0.0
|
1.0
|
HE1
|
A:PHE104
|
4.3
|
0.0
|
1.0
|
H
|
A:GLY152
|
4.3
|
0.0
|
1.0
|
H
|
A:GLU136
|
4.4
|
0.0
|
1.0
|
HB3
|
A:CYS151
|
4.6
|
0.0
|
1.0
|
SD
|
A:MET137
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS132
|
4.7
|
0.0
|
1.0
|
C
|
A:CYS135
|
4.7
|
0.0
|
1.0
|
H
|
A:CYS134
|
4.7
|
0.0
|
1.0
|
N
|
A:GLU136
|
4.7
|
0.0
|
1.0
|
CB
|
A:CYS134
|
4.8
|
0.0
|
1.0
|
HG
|
A:CYS134
|
4.8
|
0.0
|
1.0
|
N
|
A:LYS103
|
4.8
|
0.0
|
1.0
|
CE1
|
A:PHE104
|
4.8
|
0.0
|
1.0
|
N
|
A:CYS151
|
4.9
|
0.0
|
1.0
|
C
|
A:CYS134
|
4.9
|
0.0
|
1.0
|
H
|
A:MET137
|
4.9
|
0.0
|
1.0
|
C
|
A:HIS102
|
4.9
|
0.0
|
1.0
|
HD2
|
A:HIS102
|
4.9
|
0.0
|
1.0
|
N
|
A:HIS102
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 1tbo
Go back to
Zinc Binding Sites List in 1tbo
Zinc binding site 2 out
of 2 in the uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn2
b:0.3
occ:1.00
|
ND1
|
A:HIS140
|
2.0
|
0.0
|
1.0
|
SG
|
A:CYS115
|
2.1
|
0.0
|
1.0
|
SG
|
A:CYS118
|
2.4
|
0.0
|
1.0
|
SG
|
A:CYS143
|
2.4
|
0.0
|
1.0
|
HB2
|
A:HIS140
|
2.6
|
0.0
|
1.0
|
CG
|
A:HIS140
|
2.9
|
0.0
|
1.0
|
CE1
|
A:HIS140
|
3.0
|
0.0
|
1.0
|
H
|
A:CYS118
|
3.1
|
0.0
|
1.0
|
CB
|
A:CYS115
|
3.1
|
0.0
|
1.0
|
HB3
|
A:HIS117
|
3.2
|
0.0
|
1.0
|
H
|
A:HIS140
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS115
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS143
|
3.2
|
0.0
|
1.0
|
CB
|
A:HIS140
|
3.3
|
0.0
|
1.0
|
HE1
|
A:HIS140
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS115
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS143
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS118
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS118
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS143
|
3.5
|
0.0
|
1.0
|
N
|
A:CYS118
|
3.7
|
0.0
|
1.0
|
N
|
A:HIS140
|
3.9
|
0.0
|
1.0
|
HD2
|
A:HIS117
|
3.9
|
0.0
|
1.0
|
H
|
A:HIS117
|
4.0
|
0.0
|
1.0
|
HB3
|
A:HIS140
|
4.1
|
0.0
|
1.0
|
CD2
|
A:HIS140
|
4.1
|
0.0
|
1.0
|
NE2
|
A:HIS140
|
4.1
|
0.0
|
1.0
|
CA
|
A:HIS140
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS118
|
4.2
|
0.0
|
1.0
|
CB
|
A:HIS117
|
4.3
|
0.0
|
1.0
|
HB2
|
A:CYS118
|
4.4
|
0.0
|
1.0
|
HD12
|
A:LEU125
|
4.4
|
0.0
|
1.0
|
H
|
A:SER120
|
4.5
|
0.0
|
1.0
|
H
|
A:GLY119
|
4.5
|
0.0
|
1.0
|
HA
|
A:VAL139
|
4.5
|
0.0
|
1.0
|
CA
|
A:CYS115
|
4.5
|
0.0
|
1.0
|
C
|
A:HIS117
|
4.5
|
0.0
|
1.0
|
HD22
|
A:LEU122
|
4.6
|
0.0
|
1.0
|
HB2
|
A:SER120
|
4.6
|
0.0
|
1.0
|
N
|
A:HIS117
|
4.7
|
0.0
|
1.0
|
HA
|
A:HIS140
|
4.7
|
0.0
|
1.0
|
CD2
|
A:HIS117
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS143
|
4.7
|
0.0
|
1.0
|
CA
|
A:HIS117
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS115
|
4.8
|
0.0
|
1.0
|
C
|
A:VAL139
|
4.8
|
0.0
|
1.0
|
H
|
A:CYS143
|
4.9
|
0.0
|
1.0
|
CG
|
A:HIS117
|
4.9
|
0.0
|
1.0
|
HB
|
A:VAL139
|
4.9
|
0.0
|
1.0
|
HB2
|
A:HIS117
|
4.9
|
0.0
|
1.0
|
|
Reference:
R.X.Xu,
T.Pawelczyk,
T.H.Xia,
S.C.Brown.
uc(Nmr) Structure of A Protein Kinase C-Gamma Phorbol-Binding Domain and Study of Protein-Lipid Micelle Interactions. Biochemistry V. 36 10709 1997.
ISSN: ISSN 0006-2960
PubMed: 9271501
DOI: 10.1021/BI970833A
Page generated: Wed Oct 16 19:05:34 2024
|