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Zinc in PDB 1tbo: uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures

Zinc Binding Sites:

The binding sites of Zinc atom in the uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures (pdb code 1tbo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures, PDB code: 1tbo:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1tbo

Go back to Zinc Binding Sites List in 1tbo
Zinc binding site 1 out of 2 in the uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:0.5
occ:1.00
ND1 A:HIS102 1.8 0.0 1.0
SG A:CYS135 2.1 0.0 1.0
SG A:CYS132 2.5 0.0 1.0
SG A:CYS151 2.7 0.0 1.0
CE1 A:HIS102 2.8 0.0 1.0
HB3 A:HIS102 2.8 0.0 1.0
CG A:HIS102 2.8 0.0 1.0
HE1 A:HIS102 3.0 0.0 1.0
CB A:CYS132 3.2 0.0 1.0
HB2 A:CYS132 3.2 0.0 1.0
HB3 A:CYS132 3.2 0.0 1.0
CB A:HIS102 3.3 0.0 1.0
HA A:CYS151 3.3 0.0 1.0
HB3 A:CYS135 3.3 0.0 1.0
H A:CYS135 3.4 0.0 1.0
HB2 A:MET137 3.4 0.0 1.0
CB A:CYS135 3.4 0.0 1.0
HA A:HIS102 3.4 0.0 1.0
HB2 A:CYS151 3.4 0.0 1.0
CB A:CYS151 3.6 0.0 1.0
HB3 A:CYS134 3.7 0.0 1.0
NE2 A:HIS102 3.9 0.0 1.0
CA A:HIS102 3.9 0.0 1.0
N A:CYS135 3.9 0.0 1.0
CD2 A:HIS102 3.9 0.0 1.0
CA A:CYS151 4.0 0.0 1.0
HB3 A:MET137 4.0 0.0 1.0
H A:LYS103 4.1 0.0 1.0
HB2 A:CYS135 4.2 0.0 1.0
CB A:MET137 4.2 0.0 1.0
CA A:CYS135 4.2 0.0 1.0
HB2 A:HIS102 4.2 0.0 1.0
HE1 A:PHE104 4.3 0.0 1.0
H A:GLY152 4.3 0.0 1.0
H A:GLU136 4.4 0.0 1.0
HB3 A:CYS151 4.6 0.0 1.0
SD A:MET137 4.7 0.0 1.0
CA A:CYS132 4.7 0.0 1.0
C A:CYS135 4.7 0.0 1.0
H A:CYS134 4.7 0.0 1.0
N A:GLU136 4.7 0.0 1.0
CB A:CYS134 4.8 0.0 1.0
HG A:CYS134 4.8 0.0 1.0
N A:LYS103 4.8 0.0 1.0
CE1 A:PHE104 4.8 0.0 1.0
N A:CYS151 4.9 0.0 1.0
C A:CYS134 4.9 0.0 1.0
H A:MET137 4.9 0.0 1.0
C A:HIS102 4.9 0.0 1.0
HD2 A:HIS102 4.9 0.0 1.0
N A:HIS102 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1tbo

Go back to Zinc Binding Sites List in 1tbo
Zinc binding site 2 out of 2 in the uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Structure of A Protein Kinase C-G Phorbol-Binding Domain, 30 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2

b:0.3
occ:1.00
ND1 A:HIS140 2.0 0.0 1.0
SG A:CYS115 2.1 0.0 1.0
SG A:CYS118 2.4 0.0 1.0
SG A:CYS143 2.4 0.0 1.0
HB2 A:HIS140 2.6 0.0 1.0
CG A:HIS140 2.9 0.0 1.0
CE1 A:HIS140 3.0 0.0 1.0
H A:CYS118 3.1 0.0 1.0
CB A:CYS115 3.1 0.0 1.0
HB3 A:HIS117 3.2 0.0 1.0
H A:HIS140 3.2 0.0 1.0
HB2 A:CYS115 3.2 0.0 1.0
HB2 A:CYS143 3.2 0.0 1.0
CB A:HIS140 3.3 0.0 1.0
HE1 A:HIS140 3.3 0.0 1.0
HB3 A:CYS115 3.3 0.0 1.0
CB A:CYS143 3.3 0.0 1.0
HB3 A:CYS118 3.3 0.0 1.0
CB A:CYS118 3.5 0.0 1.0
HB3 A:CYS143 3.5 0.0 1.0
N A:CYS118 3.7 0.0 1.0
N A:HIS140 3.9 0.0 1.0
HD2 A:HIS117 3.9 0.0 1.0
H A:HIS117 4.0 0.0 1.0
HB3 A:HIS140 4.1 0.0 1.0
CD2 A:HIS140 4.1 0.0 1.0
NE2 A:HIS140 4.1 0.0 1.0
CA A:HIS140 4.2 0.0 1.0
CA A:CYS118 4.2 0.0 1.0
CB A:HIS117 4.3 0.0 1.0
HB2 A:CYS118 4.4 0.0 1.0
HD12 A:LEU125 4.4 0.0 1.0
H A:SER120 4.5 0.0 1.0
H A:GLY119 4.5 0.0 1.0
HA A:VAL139 4.5 0.0 1.0
CA A:CYS115 4.5 0.0 1.0
C A:HIS117 4.5 0.0 1.0
HD22 A:LEU122 4.6 0.0 1.0
HB2 A:SER120 4.6 0.0 1.0
N A:HIS117 4.7 0.0 1.0
HA A:HIS140 4.7 0.0 1.0
CD2 A:HIS117 4.7 0.0 1.0
CA A:CYS143 4.7 0.0 1.0
CA A:HIS117 4.8 0.0 1.0
HA A:CYS115 4.8 0.0 1.0
C A:VAL139 4.8 0.0 1.0
H A:CYS143 4.9 0.0 1.0
CG A:HIS117 4.9 0.0 1.0
HB A:VAL139 4.9 0.0 1.0
HB2 A:HIS117 4.9 0.0 1.0

Reference:

R.X.Xu, T.Pawelczyk, T.H.Xia, S.C.Brown. uc(Nmr) Structure of A Protein Kinase C-Gamma Phorbol-Binding Domain and Study of Protein-Lipid Micelle Interactions. Biochemistry V. 36 10709 1997.
ISSN: ISSN 0006-2960
PubMed: 9271501
DOI: 10.1021/BI970833A
Page generated: Wed Oct 16 19:05:34 2024

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